ISDA: 9GEV

Deposition Date 2024-08-07

Release Date 2025-08-20

Last Version Date 2025-08-20

Entry Detail

PDB ID:

9GEV

Keywords:

DNA BINDING PROTEIN

Title:

CryoEM structure of the human INO80 core-nucleosome complex state N-6

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)

Host Organism:

Trichoplusia ni

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.47 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RuvB-like 1
Gene (Uniprot):RUVBL1
Chain IDs:A (auth: C), N (auth: A), O (auth: B)
Chain Length:456
Number of Molecules:3
Biological Source:Homo sapiens

UniProt ID:Q9Y265 Pfam ID:PF06068, PF17856

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RuvB-like 2
Gene (Uniprot):RUVBL2
Chain IDs:B (auth: E), P (auth: D), Q (auth: F)
Chain Length:463
Number of Molecules:3
Biological Source:Homo sapiens

UniProt ID:Q9Y230 Pfam ID:PF06068, PF17856

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Chromatin-remodeling ATPase INO80
Gene (Uniprot):INO80
Chain IDs:R (auth: G)
Chain Length:1556
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9ULG1 Pfam ID:PF13892, PF00176, PF00271

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:INO80 complex subunit B
Gene (Uniprot):INO80B
Chain IDs:S (auth: H)
Chain Length:356
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9C086 Pfam ID:PF04795, PF04438

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:INO80 complex subunit C
Gene (Uniprot):INO80C
Chain IDs:C (auth: I)
Chain Length:192
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q6PI98 Pfam ID:PF08265

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Actin-related protein 5
Gene (Uniprot):ACTR5
Chain IDs:T (auth: J)
Chain Length:607
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9H9F9 Pfam ID:PF00022

Polymer Type:polydeoxyribonucleotide
Molecule:Nucleosomal DNA Strand 1
Chain IDs:D (auth: K)
Chain Length:152
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:Nucleosomal DNA Strand 2
Chain IDs:E (auth: L)
Chain Length:152
Number of Molecules:1
Biological Source:synthetic construct

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H3.1
Gene (Uniprot):H3C1, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3C10, H3C11, H3C12
Chain IDs:F (auth: M), J (auth: Q)
Chain Length:136
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P68431 Pfam ID:PF00125

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
Chain IDs:G (auth: N), K (auth: R)
Chain Length:102
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P62805 Pfam ID:PF15511

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1-B/E
Gene (Uniprot):H2AC4, H2AC8
Chain IDs:H (auth: O), L (auth: S)
Chain Length:129
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P04908 Pfam ID:PF00125, PF16211

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2B type 2-E
Gene (Uniprot):H2BC21
Chain IDs:I (auth: P), M (auth: T)
Chain Length:125
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:Q16778 Pfam ID:PF00125

Ligand Molecules