9GDF image
Deposition Date 2024-08-05
Release Date 2025-08-13
Last Version Date 2025-08-13
Entry Detail
PDB ID:
9GDF
Keywords:
OXIDOREDUCTASE
Title:
Chloride bound structure of oxidized ba3-type cytochrome c oxidase confirmed by single-wavelength anomalous diffraction
Biological Source:
Source Organism(s):
Thermus thermophilus (Taxon ID: 274)
Expression System(s):
Thermus thermophilus hb8
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.28 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
C 1 2 1
9GDF validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 1
Gene (Uniprot):cbaA
Chain IDs:A
Chain Length:569
Number of Molecules:1
Biological Source:Thermus thermophilus
UniProt ID:Q5SJ79 Pfam ID:PF00115 EC:7.1.1.9
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 2
Gene (Uniprot):cbaB
Chain IDs:B
Chain Length:168
Number of Molecules:1
Biological Source:Thermus thermophilus
UniProt ID:Q5SJ80 Pfam ID:PF09125, PF00116 EC:7.1.1.9
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase polypeptide 2A
Gene (Uniprot):cbaD
Chain IDs:C
Chain Length:34
Number of Molecules:1
Biological Source:Thermus thermophilus
UniProt ID:P82543 Pfam ID:PF08113
Ligand Molecules
CL
CU
CUA
HAS
HEM
OLC
Primary Citation
Structural changes in cytochrome c oxidase following the reduction of dioxygen to water
To Be Published ? ? ? (?)
Primary Citation of related structures
9GDF
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