ISDA: 9GD7

Deposition Date 2024-08-05

Release Date 2025-08-13

Last Version Date 2025-08-13

Entry Detail

PDB ID:

9GD7

Keywords:

DNA BINDING PROTEIN

Title:

DNA-PK Ku80 mediated dimer bound to DNA polymerase Lambda and DNA ligase 4/XRCC4

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

4.25 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA polymerase lambda
Gene (Uniprot):POLL
Chain IDs:J (auth: A)
Chain Length:575
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9UGP5 Pfam ID:PF14716, PF10391, PF14792, PF14791 EC:4.2.99.B1

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA ligase 4
Gene (Uniprot):LIG4
Chain IDs:A (auth: E)
Chain Length:911
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P49917 Pfam ID:PF04675, PF01068, PF04679, PF00533, PF11411 EC:6.5.1.1

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:X-ray repair cross-complementing protein 5
Gene (Uniprot):XRCC5
Chain IDs:B (auth: L)
Chain Length:732
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P13010 Pfam ID:PF03731, PF03730, PF02735, PF08785

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Protein PAXX
Gene (Uniprot):PAXX
Chain IDs:C (auth: M)
Chain Length:204
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9BUH6 Pfam ID:PF15384

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA repair protein XRCC4
Gene (Uniprot):XRCC4
Chain IDs:D (auth: P), E (auth: Q)
Chain Length:336
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:Q13426 Pfam ID:PF06632, PF21925, PF21924

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-dependent protein kinase catalytic subunit
Gene (Uniprot):PRKDC
Chain IDs:F (auth: S)
Chain Length:4128
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P78527 Pfam ID:PF20502, PF08163, PF19704, PF02259, PF00454, PF02260 EC:2.7.11.1

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:X-ray repair cross-complementing protein 6
Gene (Uniprot):XRCC6
Chain IDs:G (auth: T)
Chain Length:609
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P12956 Pfam ID:PF03731, PF02735, PF03730, PF02037

Polymer Type:polydeoxyribonucleotide
Molecule:DNA
Chain IDs:H (auth: i)
Chain Length:25
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polydeoxyribonucleotide
Molecule:DNA
Chain IDs:I (auth: j)
Chain Length:25
Number of Molecules:1
Biological Source:Homo sapiens

Ligand Molecules

Primary Citation

Ku70/80 anchors DNA polymerase Lambda at sites of DNA synapsis during NHEJ

Chaplin, A.K, Amin, H, Zahid, S, Hardwick, S.W.Show

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Primary Citation of related structures

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