9GCX image
Deposition Date 2024-08-03
Release Date 2025-01-22
Last Version Date 2025-01-22
Entry Detail
PDB ID:
9GCX
Title:
Crystal structure of bovine Cytochrome bc1 in complex with inhibitor F8
Biological Source:
Source Organism:
Bos taurus (Taxon ID: 9913)
Method Details:
Experimental Method:
Resolution:
3.52 Å
R-Value Free:
0.24
R-Value Work:
0.18
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 1, mitochondrial
Gene (Uniprot):UQCRC1
Chain IDs:A
Chain Length:480
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 2, mitochondrial
Gene (Uniprot):UQCRC2
Chain IDs:B
Chain Length:453
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b
Gene (Uniprot):MT-CYB
Chain IDs:C
Chain Length:379
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Cytochrome c1, heme protein, mitochondrial
Gene (Uniprot):CYC1
Chain IDs:D
Chain Length:325
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit Rieske, mitochondrial
Gene (Uniprot):UQCRFS1
Chain IDs:E, I
Chain Length:274
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 7
Gene (Uniprot):UQCRB
Chain IDs:F
Chain Length:111
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 8
Gene (Uniprot):UQCRQ
Chain IDs:G
Chain Length:82
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 6, mitochondrial
Chain IDs:H
Chain Length:109
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 9
Gene (Uniprot):UQCR10
Chain IDs:J
Chain Length:64
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 10
Gene (Uniprot):UQCR11
Chain IDs:K
Chain Length:56
Number of Molecules:1
Biological Source:Bos taurus
Primary Citation
Novel antimalarial 3-substituted quinolones isosteres with improved pharmacokinetic properties.
Eur.J.Med.Chem. 284 117228 117228 (2024)
PMID: 39752821 DOI: 10.1016/j.ejmech.2024.117228

Abstact

Aryl quinolone derivatives can target the cytochrome bc1 complex of Plasmodium falciparum, exhibiting excellent in vitro and in vivo antimalarial activity. However, their clinical development has been hindered due to their poor aqueous solubility profiles. In this study, a series of bioisosteres containing saturated heterocycles fused to a 4-pyridone ring were designed to replace the inherently poorly soluble quinolone core in antimalarial quinolones with the aim to reduce π-π stacking interactions in the crystal packing solid state, and a synthetic route was developed to prepare these alternative core derivatives. One such novel derivate, F14, exhibited significant enhancements in both aqueous solubility (20 μM) and lipophilicity (LogD 2.7), whilst retaining nanomolar antimalarial activity against the W2 strain of P. falciparum (IC50 = 235 nM). The pharmacokinetic studies reported, provide preliminary insights into the in vivo distribution and elimination of F14, while findings from single crystal X-ray diffraction experiment rationalized the enhanced solubility. Protein X-ray crystallography and in silico docking simulations provide insight into the potential mode of action within the cytochrome bc1 complex. These findings demonstrated the viability of this bioisostere replacement strategy and provided support for further exploration of in vivo efficacy in preclinical animal models and valuable insights for new drug design strategies in the fight against malaria.

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