9GCN image
Deposition Date 2024-08-02
Release Date 2025-08-06
Last Version Date 2025-08-13
Entry Detail
PDB ID:
9GCN
Keywords:
Title:
Co-crystal VHH (TPL1158_01_C09) - alpha-cobratoxin (Naja kaouthia)
Biological Source:
Source Organism:
Vicugna pacos (Taxon ID: 30538)
Naja kaouthia (Taxon ID: 8649)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.29
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Protein. Variable Domain of Heavy-Chain only Antibodies (VHH)
Chain IDs:A (auth: D), F (auth: A), G (auth: B), H (auth: C)
Chain Length:123
Number of Molecules:4
Biological Source:Vicugna pacos
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Alpha-cobratoxin
Chain IDs:B (auth: Y), C (auth: V), D (auth: X), E (auth: Z)
Chain Length:71
Number of Molecules:4
Biological Source:Naja kaouthia
Primary Citation
Structural mechanisms behind the neutralisation of long-chain alpha-neurotoxins by broadly neutralising V H Hs discovered using a consensus antigen.
Commun Chem 8 209 209 (2025)
PMID: 40681851 DOI: 10.1038/s42004-025-01600-4

Abstact

Snakebite envenoming, a neglected tropical disease, affects millions globally, causing significant morbidity and mortality. Developing broadly neutralising monoclonal antibodies offers a promising approach to address the antigenic variation present in snake venoms. In this study, we designed a long-chain consensus α-neurotoxin, LCC, to serve as an antigen in a phage display-based antibody discovery campaign. Utilising a yeast expression system, we expressed LCC and identified 21 variable domains of heavy-chain-only antibodies (VHHs) from immune libraries. These VHHs were assessed for their binding affinity to various long-chain α-neurotoxins and their neutralising capability in vitro. The VHH with the broadest cross-reactivity and highest affinity, TPL1158_01_C09, was co-crystallised with α-cobratoxin to elucidate its binding mechanism. In vivo rodent studies demonstrated the neutralisation potential of TPL1158_01_C09. Our findings highlight that the use of a consensus toxin as an antigen coincided with the discovery of broadly neutralising VHHs against snake venom toxins.

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Primary Citation of related structures
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