ISDA

Deposition Date 2024-08-01

Release Date 2025-08-13

Last Version Date 2025-08-13

Entry Detail

PDB ID:

9GCG

Keywords:

DNA BINDING PROTEIN

Title:

CryoEM structure of the human INO80 core- H2A.Z nucleosome complex

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)

Host Organism:

Trichoplusia ni

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.43 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RuvB-like 1
Gene (Uniprot):RUVBL1
Chain IDs:A (auth: C), D (auth: A), E (auth: B)
Chain Length:456
Number of Molecules:3
Biological Source:Homo sapiens

UniProt ID:Q9Y265 Pfam ID:PF06068, PF17856

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RuvB-like 2
Gene (Uniprot):RUVBL2
Chain IDs:B (auth: E), F (auth: D), G (auth: F)
Chain Length:463
Number of Molecules:3
Biological Source:Homo sapiens

UniProt ID:Q9Y230 Pfam ID:PF06068, PF17856

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Chromatin-remodeling ATPase INO80
Gene (Uniprot):INO80
Chain IDs:H (auth: G)
Chain Length:1556
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9ULG1 Pfam ID:PF13892, PF00176, PF00271

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:INO80 complex subunit B
Gene (Uniprot):INO80B
Chain IDs:I (auth: H)
Chain Length:356
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9C086 Pfam ID:PF04795, PF04438

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:INO80 complex subunit C
Gene (Uniprot):INO80C
Chain IDs:C (auth: I)
Chain Length:192
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q6PI98 Pfam ID:PF08265

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Actin-related protein 5
Gene (Uniprot):ACTR5
Chain IDs:J
Chain Length:607
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9H9F9 Pfam ID:PF00022

Polymer Type:polydeoxyribonucleotide
Molecule:Nucleosomal DNA Strand 1 (152-MER)
Chain IDs:K
Chain Length:152
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:Nucleosomal DNA Strand 2 (152-MER)
Chain IDs:L
Chain Length:152
Number of Molecules:1
Biological Source:synthetic construct

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H3.1
Gene (Uniprot):H3C1, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3C10, H3C11, H3C12
Chain IDs:M, Q
Chain Length:136
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P68431 Pfam ID:PF00125

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
Chain IDs:N, R
Chain Length:102
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P62805 Pfam ID:PF15511

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2A.Z
Gene (Uniprot):H2AZ1
Chain IDs:O
Chain Length:127
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P0C0S5 Pfam ID:PF00125, PF16211

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2B type 2-E
Gene (Uniprot):H2BC21
Chain IDs:P, T
Chain Length:125
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:Q16778 Pfam ID:PF00125

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2A.Z
Gene (Uniprot):H2AZ1
Chain IDs:S
Chain Length:127
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P0C0S5 Pfam ID:PF00125, PF16211

Ligand Molecules