9G9L image
Deposition Date 2024-07-25
Release Date 2025-08-06
Last Version Date 2026-02-18
Entry Detail
PDB ID:
9G9L
Title:
DNA-PK + Polymerase lambda
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
4.63 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-dependent protein kinase catalytic subunit
Gene (Uniprot):PRKDC
Chain IDs:A
Chain Length:4128
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:X-ray repair cross-complementing protein 6
Gene (Uniprot):XRCC6
Chain IDs:B
Chain Length:609
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:X-ray repair cross-complementing protein 5
Gene (Uniprot):XRCC5
Chain IDs:C
Chain Length:732
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA
Chain IDs:F (auth: D)
Chain Length:24
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA
Chain IDs:G (auth: E)
Chain Length:23
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA polymerase lambda
Gene (Uniprot):POLL
Chain IDs:D (auth: F)
Chain Length:575
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein PAXX
Gene (Uniprot):PAXX
Chain IDs:E (auth: M)
Chain Length:204
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural and functional insights into the interaction between Ku70/80 and Pol X family polymerases in NHEJ.
Nat Commun 16 4208 4208 (2025)
PMID: 40328761 DOI: 10.1038/s41467-025-59133-2

Abstact

Non-homologous end joining (NHEJ) is the main repair pathway for double-strand DNA breaks (DSBs) in mammals. DNA polymerases lambda (Pol λ) and mu (Pol μ), members of the Pol X family, play a key role in this process. However, their interaction within the NHEJ complexes is unclear. Here, we present cryo-EM structures of Pol λ in complex with the DNA-PK long-range synaptic complex, and Pol μ bound to Ku70/80-DNA. These structures identify interaction sites between Ku70/80 and Pol X BRCT domains. Using mutants at the proteins interface in functional assays including cell transfection with an original gap-filling reporter, we define the role of the BRCT domain in the recruitment and activity of the two Pol X members in NHEJ and in their contribution to cell survival following DSBs. Finally, we propose a unified model for the interaction of all Pol X members with Ku70/80.

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Primary Citation of related structures
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