9G8T image
Deposition Date 2024-07-24
Release Date 2025-08-06
Last Version Date 2026-02-18
Entry Detail
PDB ID:
9G8T
Keywords:
Title:
Crystal structure of the persulfide dioxygenase (PDO - PA2915) from Pseudomonas aeruginosa
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.06 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Metallo-beta-lactamase domain-containing protein
Gene (Uniprot):PA2915
Chain IDs:A
Chain Length:296
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa
Primary Citation
Structure and function of persulfide dioxygenase from Pseudomonas aeruginosa : Implications on H 2 S homeostasis and interplay with nitric oxide.
Iscience 29 114586 114586 (2026)
PMID: 41623452 DOI: 10.1016/j.isci.2025.114586

Abstact

Hydrogen sulfide is an important signaling molecule, beneficial at physiological concentrations but harmful at higher levels, due to which a tight control of its bioavailability is essential. Here, we investigated persulfide dioxygenase, an enzyme involved in H2S catabolism, from the pathogen Pseudomonas aeruginosa (PaPDO). Deletion of the gene pdo led to a 4-fold increase in H2S concentration, confirming its physiological role. The recombinant enzyme was structurally characterized at 2.06 Å resolution and assigned to the metallo-β-lactamase superfamily. Compared with its human homolog, PaPDO displayed a different dimerization area and a larger active site, suggesting different substrate preferences. Functionally, PaPDO catalyzed glutathione persulfide dioxygenation with a high turnover rate, and its activity was enhanced by reduced glutathione. Interestingly, the results show that PaPDO binds to nitric oxide, which reversibly inhibits its catalytic activity. These findings reveal a novel mechanism of crosstalk between hydrogen sulfide and nitric oxide signaling and provide insights into redox regulation in a multidrug-resistant pathogen.

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Primary Citation of related structures
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