9G7E image
Entry Detail
PDB ID:
9G7E
Title:
Crystal structure of ASGPR with bound guanosine
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-07-20
Release Date:
2025-03-19
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Asialoglycoprotein receptor 1
Chain IDs:A
Chain Length:153
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Trivalent siRNA-Conjugates with Guanosine as ASGPR-Binder Show Potent Knock-Down In Vivo.
J.Med.Chem. 68 6193 6209 (2025)
PMID: 40052708 DOI: 10.1021/acs.jmedchem.4c02275

Abstact

To increase the chemical space around the well-known GalNAc-ligand as ASGPR-binder, a high-throughput screening campaign was performed, testing approximately 550,000 compounds. After evaluation of the potential screening hits, only one compound, which showed high similarity with guanosine nucleosides, was chosen for further profiling. Crystal structure analysis revealed the coordination of the Ca2+-ion within the ASGPR-binding site by the cis-diol motif of the ribose unit as well as an additional π-π-interaction of the purine heterocycle to tryptophan-243. Based on these findings, guanosine was attached via the 5'-OH group to a recently described morpholino-based nucleotide using two different linker units. The resulting morpholino-guanosine building blocks were conjugated to the 5'-end of a literature-known transthyretin targeting small interfering RNA (siRNA), leading to trivalent siRNA-guanosine conjugates, which were tested for their TTR knockdown and exhibited similar potencies as the analogous GalNAc-conjugates in vitro and in vivo.

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