9G6V image
Deposition Date 2024-07-19
Release Date 2024-10-30
Last Version Date 2024-11-20
Entry Detail
PDB ID:
9G6V
Title:
Dissociated FMDV SAT2 Pentamer in complex with ultralong Fab117
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Genome polyprotein
Chain IDs:A (auth: 1), D (auth: B), F, H (auth: J), J (auth: N)
Chain Length:214
Number of Molecules:5
Biological Source:Foot-and-mouth disease virus SAT 2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Genome polyprotein
Chain IDs:B (auth: 2), Q (auth: C), R (auth: G), S (auth: K), T (auth: O)
Chain Length:219
Number of Molecules:5
Biological Source:Foot-and-mouth disease virus SAT 2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Genome polyprotein
Chain IDs:C (auth: 3), E (auth: D), G (auth: H), I (auth: L), K (auth: P)
Chain Length:222
Number of Molecules:5
Biological Source:Foot-and-mouth disease virus SAT 2
Polymer Type:polypeptide(L)
Molecule:Fab117 Heavy Chain
Chain IDs:L (auth: A), M (auth: E), N (auth: I), O (auth: M), P (auth: Q)
Chain Length:308
Number of Molecules:5
Biological Source:Bos taurus
Ligand Molecules
Primary Citation
A broadly reactive ultralong bovine antibody that can determine the integrity of foot-and-mouth disease virus capsids.
J.Gen.Virol. 105 ? ? (2024)
PMID: 39422666 DOI: 10.1099/jgv.0.002032

Abstact

Foot-and-mouth disease vaccination using inactivated virus is suboptimal, as the icosahedral viral capsids often disassemble into antigenically distinct pentameric units during long-term storage, or exposure to elevated temperature or lowered pH, and thus raise a response that is no longer protective. Furthermore, as foot-and-mouth disease virus (FMDV)'s seven serotypes are antigenically diverse, cross-protection from a single serotype vaccine is limited, and most existing mouse and bovine antibodies and camelid single-domain heavy chain-only antibodies are serotype-specific. For quality control purposes, there is a real need for pan-serotype antibodies that clearly distinguish between pentamer (12S) and protective intact FMDV capsid. To date, few cross-serotype bovine-derived antibodies have been reported in the literature. We identify a bovine antibody with an ultralong CDR-H3, Ab117, whose structural analysis reveals that it binds to a deep, hydrophobic pocket on the interior surface of the capsid via the CDR-H3. Main-chain and hydrophobic interactions provide broad serotype specificity. ELISA analysis confirms that Ab117 is a novel pan-serotype and conformational epitope-specific 12S reagent, suitable for assessing capsid integrity.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback