ISDA

Deposition Date 2024-07-19

Release Date 2025-06-11

Last Version Date 2025-06-11

Entry Detail

PDB ID:

9G6T

Keywords:

CELL CYCLE

Title:

p53-Y220C Core Domain Covalently Bound to 5-Chloro-6-methylpyrazine-2-carbonitrile Soaked at 5 mM

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.56 Å

R-Value Free:

0.19

R-Value Work:

0.14

R-Value Observed:

0.15

Space Group:

P 21 21 21

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cellular tumor antigen p53
Gene (Uniprot):TP53
Mutations:Y220C, M133L, V203A, N239Y, N268D
Chain IDs:A, B
Chain Length:219
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P04637 Pfam ID:PF00870

Ligand Molecules

A1II4

EDO

EPE

GOL

PEG

Primary Citation

SNAr Reactive Pyrazine Derivatives as p53-Y220C Cleft Binders with Diverse Binding Modes

Klett, T, Stahlecker, J, Schwer, M, Jaag, S.J, Masberg, B, Knappe, C, Lammerhofer, M, Stehle, T, Boeckler, F.M, Afonine, P.V, Grosse-Kunstleve, R.W, Echols, N, Headd, J.J, Moriarty, N.W, Mustyakimov, M, Terwilliger, T.C, Urzhumtsev, A, Zwart, P.H, Adams, P.D, Liebschner, D, Afonine, P.V, Baker, M.L, Bunkoczi, G, Chen, V.B, Croll, T.I, Hintze, B, Hung, L.W, Jain, S, McCoy, A.J, Moriarty, N.W, Oeffner, R.D, Poon, B.K, Prisant, M.G, Read, R.J, Richardson, J.S, Richardson, D.C, Sammito, M.D, Sobolev, O.V, Stockwell, D.H, Terwilliger, T.C, Urzhumtsev, A.G, Videau, L.L, Williams, C.J, Adams, P.D.Show

Drug Des Devel Ther ? ? ? (2025)

DOI: 10.2147/DDDT.S513792

Primary Citation of related structures