9G6O image
Deposition Date 2024-07-18
Release Date 2025-07-30
Last Version Date 2025-07-30
Entry Detail
PDB ID:
9G6O
Keywords:
Title:
Xylose Isomerase collected at 45C using time-resolved serial synchrotron crystallography with Glucose at 60 seconds
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.18
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
I 2 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Xylose isomerase
Gene (Uniprot):xylA
Chain IDs:A
Chain Length:388
Number of Molecules:1
Biological Source:Streptomyces rubiginosus
Primary Citation
Probing the modulation of enzyme kinetics by multi-temperature, time-resolved serial crystallography.
Nat Commun 16 6553 6553 (2025)
PMID: 40670369 DOI: 10.1038/s41467-025-61631-2

Abstact

The vast majority of protein structures are determined at cryogenic temperatures, which are far from physiological conditions. Nevertheless, it is well established that temperature is an essential thermodynamic parameter for understanding the conformational dynamics and functionality of proteins in their native environments. Time-resolved crystallography is a technique that aims to elucidate protein function by examining structural alterations during processes such as ligand binding, catalysis, or allostery. However, this approach is typically conducted under ambient conditions, which may obscure crucial conformational states, that are only visible at physiological temperatures. In this study, we directly address the interplay between protein structure and activity via a method that enables multi-temperature, time-resolved serial crystallography experiments in a temperature window from below 10 °C to above 70 °C. Via this 5D-SSX, time-resolved experiments can now be carried out at physiological temperatures and with long time delays, providing insights into protein function and enzyme catalysis. Our findings demonstrate the temperature-dependent modulation of turnover kinetics for the mesophilic β-lactamase CTX-M-14 and the thermophilic enzyme xylose isomerase, within the full protein structure.

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