9G5E image
Deposition Date 2024-07-16
Release Date 2025-04-23
Last Version Date 2025-04-30
Entry Detail
PDB ID:
9G5E
Keywords:
Title:
Translation-initiation state of human mitochondrial ribosome small subunit (State F)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S34, mitochondrial
Gene (Uniprot):MRPS34
Chain IDs:A (auth: 0)
Chain Length:218
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S35, mitochondrial
Gene (Uniprot):MRPS35
Chain IDs:B (auth: 1)
Chain Length:323
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS37
Gene (Uniprot):CHCHD1
Chain IDs:C (auth: 2)
Chain Length:118
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Aurora kinase A-interacting protein
Gene (Uniprot):AURKAIP1
Chain IDs:D (auth: 3)
Chain Length:199
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Pentatricopeptide repeat domain-containing protein 3, mitochondrial
Gene (Uniprot):PTCD3
Chain IDs:E (auth: 4)
Chain Length:689
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Translation initiation factor IF-2, mitochondrial
Gene (Uniprot):MTIF2
Chain IDs:F (auth: 7)
Chain Length:727
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:12S mitochondrial rRNA
Chain IDs:G (auth: A)
Chain Length:955
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S2, mitochondrial
Gene (Uniprot):MRPS2
Chain IDs:H (auth: B)
Chain Length:296
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S24, mitochondrial
Gene (Uniprot):MRPS24
Chain IDs:I (auth: C)
Chain Length:167
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S5, mitochondrial
Gene (Uniprot):MRPS5
Chain IDs:J (auth: D)
Chain Length:430
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S6, mitochondrial
Gene (Uniprot):MRPS6
Chain IDs:K (auth: E)
Chain Length:125
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S7, mitochondrial
Gene (Uniprot):MRPS7
Chain IDs:L (auth: F)
Chain Length:242
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S9, mitochondrial
Gene (Uniprot):MRPS9
Chain IDs:M (auth: G)
Chain Length:396
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S10, mitochondrial
Gene (Uniprot):MRPS10
Chain IDs:N (auth: H)
Chain Length:201
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S11, mitochondrial
Gene (Uniprot):MRPS11
Chain IDs:O (auth: I)
Chain Length:194
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S12, mitochondrial
Gene (Uniprot):MRPS12
Chain IDs:P (auth: J)
Chain Length:138
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S14, mitochondrial
Gene (Uniprot):MRPS14
Chain IDs:Q (auth: K)
Chain Length:128
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S15, mitochondrial
Gene (Uniprot):MRPS15
Chain IDs:R (auth: L)
Chain Length:257
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S16, mitochondrial
Gene (Uniprot):MRPS16
Chain IDs:S (auth: M)
Chain Length:137
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S17, mitochondrial
Gene (Uniprot):MRPS17
Chain IDs:T (auth: N)
Chain Length:130
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S18b, mitochondrial
Gene (Uniprot):MRPS18B
Chain IDs:U (auth: O)
Chain Length:258
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S18c, mitochondrial
Gene (Uniprot):MRPS18C
Chain IDs:V (auth: P)
Chain Length:142
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S21, mitochondrial
Gene (Uniprot):MRPS21
Chain IDs:W (auth: Q)
Chain Length:87
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S22, mitochondrial
Gene (Uniprot):MRPS22
Chain IDs:X (auth: R)
Chain Length:360
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S23, mitochondrial
Gene (Uniprot):MRPS23
Chain IDs:Y (auth: S)
Chain Length:190
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S25, mitochondrial
Gene (Uniprot):MRPS25
Chain IDs:Z (auth: T)
Chain Length:173
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S26, mitochondrial
Gene (Uniprot):MRPS26
Chain IDs:AA (auth: U)
Chain Length:205
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S27, mitochondrial
Gene (Uniprot):MRPS27
Chain IDs:BA (auth: V)
Chain Length:414
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S28, mitochondrial
Gene (Uniprot):MRPS28
Chain IDs:CA (auth: W)
Chain Length:187
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S29, mitochondrial
Gene (Uniprot):DAP3
Chain IDs:DA (auth: X)
Chain Length:398
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S31, mitochondrial
Gene (Uniprot):MRPS31
Chain IDs:EA (auth: Y)
Chain Length:395
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S33, mitochondrial
Gene (Uniprot):MRPS33
Chain IDs:FA (auth: Z)
Chain Length:106
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Coupling of ribosome biogenesis and translation initiation in human mitochondria.
Nat Commun 16 3641 3641 (2025)
PMID: 40240327 DOI: 10.1038/s41467-025-58827-x

Abstact

Biogenesis of mitoribosomes requires dedicated chaperones, RNA-modifying enzymes, and GTPases, and defects in mitoribosome assembly lead to severe mitochondriopathies in humans. Here, we characterize late-step assembly states of the small mitoribosomal subunit (mtSSU) by combining genetic perturbation and mutagenesis analysis with biochemical and structural approaches. Isolation of native mtSSU biogenesis intermediates via a FLAG-tagged variant of the GTPase MTG3 reveals three distinct assembly states, which show how factors cooperate to mature the 12S rRNA. In addition, we observe four distinct primed initiation mtSSU states with an incompletely matured rRNA, suggesting that biogenesis and translation initiation are not mutually exclusive processes but can occur simultaneously. Together, these results provide insights into mtSSU biogenesis and suggest a functional coupling between ribosome biogenesis and translation initiation in human mitochondria.

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