9G3C image
Deposition Date 2024-07-12
Release Date 2024-12-04
Last Version Date 2025-01-22
Entry Detail
PDB ID:
9G3C
Keywords:
Title:
Crystal Structure of the artificial protein METP in complex with cadmium ion at different temperatures. 200 K data collection
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Work:
0.12
R-Value Observed:
0.13
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:METP artificial protein
Chain IDs:A (auth: C)
Chain Length:30
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation

Abstact

The design of protein-metal complexes is rapidly advancing, with applications spanning catalysis, sensing, and bioremediation. We report a comprehensive investigation of METPsc1, a Miniaturized Electron Transfer Protein, in complex with cadmium. This study elucidates the impact of metal coordination on protein folding and structural dynamics across temperatures from 100 K to 300 K. Our findings reveal that METPsc1, composed of two similar halves stabilized by intramolecular hydrogen bonds, exhibits a unique "clothespin-like" recoil mechanism. This allows it to adapt to metal ions of varying radii, mirroring the flexibility observed in natural rubredoxins. High-resolution crystallography and molecular dynamics simulations unveil concerted backbone motions and subtle temperature-dependent shifts in side-chain conformations, particularly for residues involved in crystal packing. Notably, CdS bond lengths increase with temperature, correlating with anisotropic motions of the sulfur atoms involved in second-shell hydrogen bonding. This suggests a dynamic role of protein matrix upon redox cycling. These insights into METPsc1 highlight its potential for catalysis and contribute to the designing of artificial metalloproteins with functional plasticity.

Legend

Protein

Chemical

Disease

Primary Citation of related structures