9G0A image
Deposition Date 2024-07-07
Release Date 2025-07-16
Last Version Date 2025-07-16
Entry Detail
PDB ID:
9G0A
Keywords:
VIRUS
Title:
Influenza A/H7N9 polymerase post-cleavage cap-snatching complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Influenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9)) (Taxon ID: 1318616)
Influenza B virus (Taxon ID: 11520)
synthetic construct (Taxon ID: 32630)
Sus scrofa domesticus (Taxon ID: 9825)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9G0A validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit
Gene (Uniprot):POLR2A
Chain IDs:C (auth: A)
Chain Length:1641
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:I3LJR4 Pfam ID:PF04997, PF00623, PF04983, PF05000, PF04998, PF04992, PF04990, PF05001
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit beta
Gene (Uniprot):POLR2B
Chain IDs:K (auth: B)
Chain Length:1174
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:A0A0B8RVL1 Pfam ID:PF04563, PF04561, PF04565, PF04566, PF04567, PF00562, PF04560
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB3
Gene (Uniprot):POLR2C
Chain IDs:L (auth: C)
Chain Length:759
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:I3LCH3 Pfam ID:PF01193, PF01000
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RNA polymerase II subunit D
Gene (Uniprot):POLR2D
Chain IDs:V (auth: D)
Chain Length:184
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:A0A287ADR4 Pfam ID:PF03874
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit E
Gene (Uniprot):POLR2E
Chain IDs:M (auth: E)
Chain Length:210
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:I3LSI7 Pfam ID:PF03871, PF01191
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases I, II, and III subunit RPABC2
Gene (Uniprot):POLR2F
Chain IDs:N (auth: F)
Chain Length:127
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:A0A4X1VEK9 Pfam ID:PF01192
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit
Gene (Uniprot):POLR2G
Chain IDs:W (auth: G)
Chain Length:172
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:A0A4X1VKG7 Pfam ID:PF03876, PF00575
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases I, II, and III subunit RPABC3
Gene (Uniprot):POLR2H
Chain IDs:O (auth: H)
Chain Length:150
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:I3LCB2 Pfam ID:PF03870
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB9
Gene (Uniprot):POLR2I
Chain IDs:P (auth: I)
Chain Length:125
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:P60899 Pfam ID:PF02150, PF01096
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases I, II, and III subunit RPABC5
Gene (Uniprot):POLR2L
Chain IDs:Q (auth: J)
Chain Length:67
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:A0A4X1VYD0 Pfam ID:PF01194
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB11-a
Gene (Uniprot):POLR2J
Chain IDs:R (auth: K)
Chain Length:117
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:F1RKE4 Pfam ID:PF13656
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RNA polymerase II, I and III subunit K
Gene (Uniprot):POLR2K
Chain IDs:S (auth: L)
Chain Length:58
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:A0A4X1TRS6 Pfam ID:PF03604
Polymer Type:polydeoxyribonucleotide
Molecule:nontemplate DNA (43-mer)
Chain IDs:T (auth: N)
Chain Length:43
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polyribonucleotide
Molecule:5' cap(1) RNA
Chain IDs:D (auth: P)
Chain Length:35
Number of Molecules:1
Biological Source:Influenza B virus
Polymer Type:polydeoxyribonucleotide
Molecule:template DNA (43-mer)
Chain IDs:U (auth: T)
Chain Length:43
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Molecule:likely linker between KOWx4 and KOW5 domains of SPT5
Chain IDs:J (auth: X)
Chain Length:14
Number of Molecules:1
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription elongation factor SPT4
Gene (Uniprot):SUPT4H1
Chain IDs:B (auth: Y)
Chain Length:117
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P63272 Pfam ID:PF06093
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription elongation factor SPT5
Gene (Uniprot):SUPT5H
Chain IDs:A (auth: Z)
Chain Length:1087
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:O00267 Pfam ID:PF11942, PF03439, PF00467
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Polymerase acidic protein
Gene (Uniprot):PA
Mutations:E119D
Chain IDs:E (auth: a)
Chain Length:1641
Number of Molecules:1
Biological Source:Influenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9))
UniProt ID:M9TI86 Pfam ID:PF00603
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RNA-directed RNA polymerase catalytic subunit
Gene (Uniprot):PB1
Chain IDs:F (auth: b)
Chain Length:1174
Number of Molecules:1
Biological Source:Influenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9))
UniProt ID:M9TLW3 Pfam ID:PF00602
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Polymerase basic protein 2
Gene (Uniprot):PB2
Chain IDs:G (auth: c)
Chain Length:759
Number of Molecules:1
Biological Source:Influenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9))
UniProt ID:X5F427 Pfam ID:PF20947, PF20948, PF20949, PF20950, PF00604, PF20951, PF20952
Polymer Type:polyribonucleotide
Molecule:3' vRNA
Chain IDs:H (auth: r)
Chain Length:13
Number of Molecules:1
Biological Source:Influenza B virus
Polymer Type:polyribonucleotide
Molecule:5' vRNA
Chain IDs:I (auth: v)
Chain Length:14
Number of Molecules:1
Biological Source:Influenza B virus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP C SER modified residue
Ligand Molecules
G1G
MG
PO4
ZN
Primary Citation
Mechanism of Co-Transcriptional Cap-Snatching by Influenza Polymerase
To Be Published ? ? ? (?)
Primary Citation of related structures
9FYX