9FZZ image
Deposition Date 2024-07-06
Release Date 2025-02-05
Last Version Date 2025-07-09
Entry Detail
PDB ID:
9FZZ
Keywords:
Title:
Structure of carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) in complex with corrinoid iron-sulfur protein (CoFeSP) from Clostridium autoethanogenum (composite structure, class 3B)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.65 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Carbon monoxide dehydrogenase/acetyl-CoA synthase beta subunit
Chain IDs:D (auth: B), E (auth: C)
Chain Length:630
Number of Molecules:2
Biological Source:Clostridium autoethanogenum DSM 10061
Polymer Type:polypeptide(L)
Molecule:CO-methylating acetyl-CoA synthase
Chain IDs:A (auth: D), C (auth: A)
Chain Length:708
Number of Molecules:2
Biological Source:Clostridium autoethanogenum DSM 10061
Polymer Type:polypeptide(L)
Molecule:Acetyl-CoA decarbonylase/synthase complex subunit delta
Gene (Uniprot):acsD
Chain IDs:B (auth: E)
Chain Length:314
Number of Molecules:1
Biological Source:Clostridium autoethanogenum DSM 10061
Polymer Type:polypeptide(L)
Molecule:Corrinoid iron-sulfur protein large subunit
Chain IDs:F
Chain Length:450
Number of Molecules:1
Biological Source:Clostridium autoethanogenum DSM 10061
Primary Citation
Conformational dynamics of a multienzyme complex in anaerobic carbon fixation.
Science 387 498 504 (2025)
PMID: 39883773 DOI: 10.1126/science.adr9672

Abstact

In the ancient microbial Wood-Ljungdahl pathway, carbon dioxide (CO2) is fixed in a multistep process that ends with acetyl-coenzyme A (acetyl-CoA) synthesis at the bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase complex (CODH/ACS). In this work, we present structural snapshots of the CODH/ACS from the gas-converting acetogen Clostridium autoethanogenum, characterizing the molecular choreography of the overall reaction, including electron transfer to the CODH for CO2 reduction, methyl transfer from the corrinoid iron-sulfur protein (CoFeSP) partner to the ACS active site, and acetyl-CoA production. Unlike CODH, the multidomain ACS undergoes large conformational changes to form an internal connection to the CODH active site, accommodate the CoFeSP for methyl transfer, and protect the reaction intermediates. Altogether, the structures allow us to draw a detailed reaction mechanism of this enzyme, which is crucial for CO2 fixation in anaerobic organisms.

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Primary Citation of related structures