9FZL image
Deposition Date 2024-07-05
Release Date 2025-07-23
Last Version Date 2025-07-23
Entry Detail
PDB ID:
9FZL
Keywords:
MEMBRANE PROTEIN
Title:
Perkinsus marinus respiratory supercomplex CII2CIII2CIV2 in an intermediate state
Biological Source:
Source Organism:
Perkinsus marinus (Taxon ID: 31276)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9FZL validation report
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial
Chain IDs:A (auth: 2M), XA (auth: 2m)
Chain Length:604
Number of Molecules:2
Biological Source:Perkinsus marinus
Polymer Type:polypeptide(L)
Molecule:Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial
Chain IDs:B (auth: 2N), YA (auth: 2n)
Chain Length:259
Number of Molecules:2
Biological Source:Perkinsus marinus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SDHG
Gene (Uniprot):Pmar_PMAR001074
Chain IDs:C (auth: 2O), ZA (auth: 2o)
Chain Length:160
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5KTH2
Polymer Type:polypeptide(L)
Molecule:Transmembrane protein
Chain IDs:D (auth: 2P), AB (auth: 2p)
Chain Length:158
Number of Molecules:2
Biological Source:Perkinsus marinus
Polymer Type:polypeptide(L)
Molecule:Kinesin-like protein
Chain IDs:E (auth: 2Q), BB (auth: 2q)
Chain Length:69
Number of Molecules:2
Biological Source:Perkinsus marinus
Polymer Type:polypeptide(L)
Molecule:SDHH
Chain IDs:F (auth: 2R), CB (auth: 2r)
Chain Length:117
Number of Molecules:2
Biological Source:Perkinsus marinus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DUF6827 domain-containing protein
Gene (Uniprot):Pmar_PMAR013480
Chain IDs:G (auth: 2S), DB (auth: 2s)
Chain Length:165
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5L1Y6 Pfam ID:PF20715
Polymer Type:polypeptide(L)
Molecule:Rab-GAP TBC domain-containing protein
Chain IDs:H (auth: 2T), EB (auth: 2t)
Chain Length:82
Number of Molecules:2
Biological Source:Perkinsus marinus
Polymer Type:polypeptide(L)
Molecule:Syntaxin-1A
Chain IDs:I (auth: 2U), FB (auth: 2u)
Chain Length:48
Number of Molecules:2
Biological Source:Perkinsus marinus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SDHI
Gene (Uniprot):Pmar_PMAR011745
Chain IDs:J (auth: 2V), GB (auth: 2v)
Chain Length:87
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5LCL6
Polymer Type:polypeptide(L)
Molecule:Mitochondrial processing peptidase beta subunit
Chain IDs:K (auth: 3A), HB (auth: 3a)
Chain Length:454
Number of Molecules:2
Biological Source:Perkinsus marinus
Polymer Type:polypeptide(L)
Molecule:Alpha-MPP
Chain IDs:L (auth: 3B), IB (auth: 3b)
Chain Length:496
Number of Molecules:2
Biological Source:Perkinsus marinus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Iso-1-cytochrome c
Gene (Uniprot):Pmar_PMAR028703
Chain IDs:M (auth: 3C), JB (auth: 3c)
Chain Length:241
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5K8N0 Pfam ID:PF02167
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:QCR8
Gene (Uniprot):Pmar_PMAR003928
Chain IDs:N (auth: 3D), KB (auth: 3d)
Chain Length:95
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5L848
Polymer Type:polypeptide(L)
Molecule:QCR9
Chain IDs:O (auth: 3E), LB (auth: 3e)
Chain Length:92
Number of Molecules:2
Biological Source:Perkinsus marinus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:QCR10
Gene (Uniprot):Pmar_PMAR019102
Chain IDs:P (auth: 3F), MB (auth: 3f)
Chain Length:84
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5KTV6
Polymer Type:polypeptide(L)
Molecule:Cytochrome b
Chain IDs:Q (auth: 3G), NB (auth: 3g)
Chain Length:354
Number of Molecules:2
Biological Source:Perkinsus marinus
Polymer Type:polypeptide(L)
Molecule:Ubiquinol-cytochrome c reductase, iron-sulfur subunit, putative
Chain IDs:R (auth: 3H), OB (auth: 3h)
Chain Length:326
Number of Molecules:2
Biological Source:Perkinsus marinus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquinol-cytochrome C reductase complex 14kD subunit, putative
Gene (Uniprot):Pmar_PMAR026691
Chain IDs:S (auth: 3I), PB (auth: 3i)
Chain Length:176
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5LWC5 Pfam ID:PF02271
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative
Gene (Uniprot):Pmar_PMAR002217, Pmar_PMAR008750, Pmar_PMAR014855
Chain IDs:T (auth: 3J), QB (auth: 3j)
Chain Length:92
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5L0W9 Pfam ID:PF02320
Polymer Type:polypeptide(L)
Molecule:Cu-binding protein
Chain IDs:U (auth: 3K), RB (auth: 3k)
Chain Length:79
Number of Molecules:2
Biological Source:Perkinsus marinus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Aurora kinase
Gene (Uniprot):Pmar_PMAR027927
Chain IDs:V (auth: 3L), SB (auth: 3l)
Chain Length:69
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5LDF5
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 3
Chain IDs:W (auth: 40), TB (auth: 41)
Chain Length:230
Number of Molecules:2
Biological Source:Perkinsus marinus
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 6B
Chain IDs:X (auth: 4A), UB (auth: 4a)
Chain Length:100
Number of Molecules:2
Biological Source:Perkinsus marinus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Peptidase M14 carboxypeptidase A domain-containing protein
Gene (Uniprot):Pmar_PMAR009509
Chain IDs:Y (auth: 4B), VB (auth: 4b)
Chain Length:93
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5KED7
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 40
Gene (Uniprot):Pmar_PMAR020595, Pmar_PMAR020832
Chain IDs:Z (auth: 4C), WB (auth: 4c)
Chain Length:75
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5L7H1
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 34
Chain IDs:AA (auth: 4D), XB (auth: 4d)
Chain Length:90
Number of Molecules:2
Biological Source:Perkinsus marinus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Merozoite surface protein, putative
Gene (Uniprot):Pmar_PMAR008723
Chain IDs:BA (auth: 4E), YB (auth: 4e)
Chain Length:152
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5L0U1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin, putative
Gene (Uniprot):Pmar_PMAR019904
Chain IDs:CA (auth: 4F), ZB (auth: 4f)
Chain Length:73
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5KBY9
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 33
Gene (Uniprot):Pmar_PMAR018803, Pmar_PMAR026150
Chain IDs:DA (auth: 4G), AC (auth: 4g)
Chain Length:100
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5KJE7
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 30
Chain IDs:EA (auth: 4H), BC (auth: 4h)
Chain Length:141
Number of Molecules:2
Biological Source:Perkinsus marinus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 6C
Gene (Uniprot):Pmar_PMAR017244
Chain IDs:FA (auth: 4I), CC (auth: 4i)
Chain Length:196
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5LPW2
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 24
Chain IDs:GA (auth: 4J), DC (auth: 4j)
Chain Length:186
Number of Molecules:2
Biological Source:Perkinsus marinus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 37
Gene (Uniprot):Pmar_PMAR001086
Chain IDs:HA (auth: 4K), EC (auth: 4k)
Chain Length:93
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5KST9
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 7A
Gene (Uniprot):Pmar_PMAR016315
Chain IDs:IA (auth: 4L), FC (auth: 4l)
Chain Length:122
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5KPD1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 35
Gene (Uniprot):Pmar_PMAR026525
Chain IDs:JA (auth: 4M), GC (auth: 4m)
Chain Length:98
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5LDS7
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase polypeptide II
Gene (Uniprot):Pmar_PMAR018000
Chain IDs:KA (auth: 4N), HC (auth: 4n)
Chain Length:131
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5LND1 Pfam ID:PF00116
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:GINS subunit domain-containing protein
Gene (Uniprot):Pmar_PMAR021765
Chain IDs:LA (auth: 4O), IC (auth: 4o)
Chain Length:47
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5LG07
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 2A
Chain IDs:MA (auth: 4P), JC (auth: 4p)
Chain Length:180
Number of Molecules:2
Biological Source:Perkinsus marinus
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 1
Chain IDs:NA (auth: 4Q), KC (auth: 4q)
Chain Length:459
Number of Molecules:2
Biological Source:Perkinsus marinus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 32
Gene (Uniprot):Pmar_PMAR001120
Chain IDs:OA (auth: 4R), LC (auth: 4r)
Chain Length:103
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5KSX3
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 7C
Gene (Uniprot):Pmar_PMAR004196
Chain IDs:PA (auth: 4S), MC (auth: 4s)
Chain Length:65
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5LPK3
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 13
Chain IDs:QA (auth: 4T), NC (auth: 4t)
Chain Length:121
Number of Molecules:2
Biological Source:Perkinsus marinus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Amino acid transporter transmembrane domain-containing protein
Gene (Uniprot):Pmar_PMAR021826
Chain IDs:RA (auth: 4U), OC (auth: 4u)
Chain Length:91
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5LG64
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 4
Chain IDs:SA (auth: 4V), PC (auth: 4v)
Chain Length:185
Number of Molecules:2
Biological Source:Perkinsus marinus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 19
Gene (Uniprot):Pmar_PMAR008743
Chain IDs:TA (auth: 4W), QC (auth: 4w)
Chain Length:141
Number of Molecules:2
Biological Source:Perkinsus marinus
UniProt ID:C5L0W2
Polymer Type:polypeptide(L)
Molecule:Cytochrome Coxidase subunit, putative
Chain IDs:UA (auth: 4X), RC (auth: 4x)
Chain Length:226
Number of Molecules:2
Biological Source:Perkinsus marinus
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 18
Chain IDs:VA (auth: 4Y), SC (auth: 4y)
Chain Length:107
Number of Molecules:2
Biological Source:Perkinsus marinus
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 31
Chain IDs:WA (auth: 4Z), TC (auth: 4z)
Chain Length:186
Number of Molecules:2
Biological Source:Perkinsus marinus
Ligand Molecules
AJP
CDL
CU
CUA
F3S
FAD
FES
HEA
HEC
HEM
K
LPP
MG
PC1
PEE
PER
SF4
UQ8
ZN
Primary Citation
Perkinsus marinus respiratory supercomplex CII2CIII2CIV2 in an intermediate state
To Be Published ? ? ? (?)
Primary Citation of related structures
9FQ8
9FQK
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