9FZI image
Deposition Date 2024-07-05
Release Date 2025-02-19
Last Version Date 2025-03-12
Entry Detail
PDB ID:
9FZI
Keywords:
Title:
A new crystal structure of the hPXR-LBD in fusion with an SRC1 co-activator peptide and in complex with SR12813 (P212121 form)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Nuclear receptor subfamily 1 group I member 2,Nuclear receptor coactivator 1
Gene (Uniprot):NR1I2, NCOA1
Chain IDs:A, B
Chain Length:345
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
A two-in-one expression construct for biophysical and structural studies of the human pregnane X receptor ligand-binding domain, a pharmaceutical and environmental target.
Acta Crystallogr.,Sect.F 81 85 94 (2025)
PMID: 39923198 DOI: 10.1107/S2053230X2500069X

Abstact

The ligand-binding domain (LBD) of the human nuclear receptor pregnane X receptor (PXR) is known to crystallize in two different crystal forms, P212121 or P43212, depending on the construct and the strategy used for protein production, as well as the presence or absence of the coactivator-derived peptide SRC-1. In order to facilitate biophysical and structural studies, a versatile construct was designed that allows access to both forms. This was achieved by introducing a thrombin cleavage site between the PXRLBD and the SRC-1 peptide fused to its C-terminus. Here, we describe the expression, purification and crystallization processes of this novel construct and report two new structures of PXRLBD that were obtained thanks to this strategy.

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Primary Citation of related structures