9FTC image
Deposition Date 2024-06-24
Release Date 2024-10-09
Last Version Date 2024-12-18
Entry Detail
PDB ID:
9FTC
Keywords:
Title:
Aeromonas caviae CMP-Pse5Ac7Ac synthetase in the presence of CMP-Pse5Ac7Ac.
Biological Source:
Source Organism:
Aeromonas caviae (Taxon ID: 648)
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.18
R-Value Work:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NeuA
Gene (Uniprot):neuA
Chain IDs:A, B
Chain Length:248
Number of Molecules:2
Biological Source:Aeromonas caviae
Ligand Molecules
Primary Citation
Structural dissection of the CMP-pseudaminic acid synthetase, PseF.
Structure 32 2399 ? (2024)
PMID: 39393361 DOI: 10.1016/j.str.2024.09.017

Abstact

Pseudaminic acid is a non-mammalian sugar found in the surface glycoconjugates of many bacteria, including several human pathogens, and is a virulence factor thought to facilitate immune evasion. The final step in the biosynthesis of the nucleotide activated form of the sugar, CMP-Pse5Ac7Ac is performed by a CMP-Pse5Ac7Ac synthetase (PseF). Here we present the biochemical and structural characterization of PseF from Aeromonas caviae (AcPseF), with AcPseF displaying metal-dependent activity over a broad pH and temperature range. Upon binding to CMP-Pse5Ac7Ac, AcPseF undergoes dynamic movements akin to other CMP-ulosonic acid synthetases. The enzyme clearly discriminates Pse5Ac7Ac from other ulosonic acids, through active site interactions with side-chain functional groups and by positioning the molecule in a hydrophobic pocket. Finally, we show that AcPseF binds the CMP-Pse5Ac7Ac side chain in the lowest energy conformation, a trend that we observed in the structures of other enzymes of this class.

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Primary Citation of related structures