9FS5 image
Deposition Date 2024-06-20
Release Date 2024-12-11
Last Version Date 2025-06-11
Entry Detail
PDB ID:
9FS5
Title:
Cryo-EM structure of the decameric TraT surface exclusion lipoprotein from Escherichia coli (F plasmid)
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.66 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:TraT complement resistance protein
Chain IDs:A, B, C, D, E, F, G, H, I, J
Chain Length:225
Number of Molecules:10
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Cryo-EM structure and evolutionary history of the conjugation surface exclusion protein TraT.
Nat Commun 16 659 659 (2025)
PMID: 39809778 DOI: 10.1038/s41467-025-55834-w

Abstact

Conjugation plays a major role in dissemination of antimicrobial resistance genes. Following transfer of IncF-like plasmids, recipients become refractory to a second wave of conjugation with the same plasmid via entry (TraS) and surface (TraT) exclusion mechanisms. Here, we show that TraT from the pKpQIL and F plasmids (TraTpKpQIL and TraTF) exhibits plasmid surface exclusion specificity. The cryo-EM structures of TraTpKpQIL and TraTF reveal that they oligomerise into decameric champagne bottle cork-like structures, which are anchored to the outer membrane via a diacylglycerol and palmitic acid modified α-helical barrel domain. Unexpectedly, we identify chromosomal TraT homologues from multiple Gram-negative phyla which form numerous divergent lineages in a phylogenetic tree of TraT sequences. Plasmid-associated TraT sequences are found in multiple distinct lineages, including two separate clades incorporating TraT from Enterobacteriaceae IncF/F-like and Legionellaceae F-like plasmids. These findings suggest that different plasmid backbones have acquired and co-opted TraT on independent occasions.

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Primary Citation of related structures