9FRV image
Entry Detail
PDB ID:
9FRV
Keywords:
Title:
Arginase 2 in complex with inhibitor
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-06-19
Release Date:
2024-11-27
Method Details:
Experimental Method:
Resolution:
2.06 Å
R-Value Free:
0.31
R-Value Work:
0.27
R-Value Observed:
0.28
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Arginase-2, mitochondrial
Chain IDs:A, B, C
Chain Length:336
Number of Molecules:3
Biological Source:Homo sapiens
Primary Citation
Design and Synthesis of Acyclic Boronic Acid Arginase Inhibitors.
J.Med.Chem. 67 20799 20826 (2024)
PMID: 39540340 DOI: 10.1021/acs.jmedchem.4c02295

Abstact

Arginase has long been a target of interest in immuno-oncology, but discovering an orally bioavailable inhibitor is severely constrained by the requisite boronic acid pharmacophore. We began our drug discovery campaign by building off the β-position of the literature inhibitor ABH (1). A divergent synthesis with an Ireland-Claisen rearrangement as the key step allowed access to numerous compounds, some of which we crystallized in the active site of arginase 2. We subsequently used structure-based drug design to further improve the potency of this series, ultimately achieving an inhibitor with an IC50 value of 12 nM. Many compounds in this series were designed to behave as prodrugs, releasing their payload with up to 4-fold improved oral exposure relative to the parent. Subtle stereochemical differences between these various inhibitors and prodrugs had substantial effects on potency and pharmacokinetics.

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