ISDA

Entry Detail

PDB ID:

9FR4

EMDB ID:

EMD-50708

Keywords:

VIRAL PROTEIN

Title:

Structure of the SARS-CoV-2 spike glycoprotein in complex with nanobody 7F (local refinement)

Biological Source:

Source Organism:

Severe acute respiratory syndrome coronavirus, Lama glama

Host Organism:

Homo sapiens

PDB Version:

Deposition Date:

2024-06-18

Release Date:

2025-03-19

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.10 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Polymer Type:polypeptide(L)
Description:Nanobody 7F
Chain IDs:B (auth: A), D (auth: C)
Chain Length:148
Number of Molecules:2
Biological Source:Lama glama

Protein Blast

Polymer Type:polypeptide(L)
Description:Spike glycoprotein
Chain IDs:A (auth: B), C (auth: D)
Chain Length:1275
Number of Molecules:2
Biological Source:Severe acute respiratory syndrome coronavirus

UniProt ID:P0DTC2 Pfam ID:PF16451, PF09408, PF19209, PF01601

Ligand Molecules

Primary Citation

A Spike Trimer Dimer-Inducing Nanobody with Anti-Sarbecovirus Activity

Debski-Antoniak, O, Swart, I.C, Zegar, A, de Bouter, T, Chatziandreou, M, van den Berg, M, Drulyte, I, Pyrc, K, de Haan, C.A.M, Bosch, B.J, Hurdiss, D.L, Oliveira, S.Show

To Be Published ? ? ? (?)

Primary Citation of related structures