ISDA

Entry Detail

PDB ID:

9FR3

EMDB ID:

EMD-50707

Keywords:

VIRAL PROTEIN

Title:

Structure of the SARS-CoV-2 spike glycoprotein in complex with nanobody 7F

Biological Source:

Source Organism:

Lama glama, Severe acute respiratory syndrome coronavirus

Host Organism:

Escherichia coli-Pichia pastoris shuttle vector pPpARG4

PDB Version:

Deposition Date:

2024-06-18

Release Date:

2025-03-19

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.30 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:Spike glycoprotein
Chain IDs:B (auth: A), D (auth: B), F (auth: D), H (auth: G), J (auth: H), L (auth: J)
Chain Length:1275
Number of Molecules:6
Biological Source:Severe acute respiratory syndrome coronavirus

UniProt ID:P0DTC2 Pfam ID:PF16451, PF09408, PF19209, PF01601

Polymer Type:polypeptide(L)
Description:Nanobody 7F
Chain IDs:A (auth: C), C (auth: E), E (auth: F), G (auth: I), I (auth: K), K (auth: L)
Chain Length:148
Number of Molecules:6
Biological Source:Lama glama

Ligand Molecules

NAG

Primary Citation

A Spike Trimer Dimer-Inducing Nanobody with Anti-Sarbecovirus Activity

Debski-Antoniak, O, Swart, I.C, Zegar, A, de Bouter, T, Chatziandreou, M, van den Berg, M, Drulyte, I, Pyrc, K, de Haan, C.A.M, Bosch, B.J, Hurdiss, D.L, Oliveira, S.Show

To Be Published ? ? ? (?)

Primary Citation of related structures