9FQI image
Entry Detail
PDB ID:
9FQI
Keywords:
Title:
E3 ligase Cbl-b in complex with a lactam scaffold inhibitor (compound 7)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-06-17
Release Date:
2024-07-31
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.29
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:E3 ubiquitin-protein ligase CBL-B
Chain IDs:A
Chain Length:394
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Accelerated Discovery of Carbamate Cbl-b Inhibitors Using Generative AI Models and Structure-Based Drug Design.
J.Med.Chem. 67 14210 14233 (2024)
PMID: 39132828 DOI: 10.1021/acs.jmedchem.4c01034

Abstact

Casitas B-lymphoma proto-oncogene-b (Cbl-b) is a RING finger E3 ligase that has an important role in effector T cell function, acting as a negative regulator of T cell, natural killer (NK) cell, and B cell activation. A discovery effort toward Cbl-b inhibitors was pursued in which a generative AI design engine, REINVENT, was combined with a medicinal chemistry structure-based design to discover novel inhibitors of Cbl-b. Key to the success of this effort was the evolution of the "Design" phase of the Design-Make-Test-Analyze cycle to involve iterative rounds of an in silico structure-based drug design, strongly guided by physics-based affinity prediction and machine learning DMPK predictive models, prior to selection for synthesis. This led to the accelerated discovery of a potent series of carbamate Cbl-b inhibitors.

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