ISDA: 9FPY

Deposition Date 2024-06-14

Release Date 2025-06-25

Last Version Date 2025-06-25

Entry Detail

PDB ID:

9FPY

Keywords:

TRANSCRIPTION

Title:

Structure of the complete Vaccinia DNA-dependent RNA polymerase complex assembly intermediate 3

Biological Source:

Source Organism:

Orthopoxvirus vaccinia (Taxon ID: 10245)

Host Organism:

Vaccinia virus

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.40 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 147 kDa polypeptide
Gene (Uniprot):OPG105
Chain IDs:H (auth: A)
Chain Length:1286
Number of Molecules:1
Biological Source:Orthopoxvirus vaccinia

UniProt ID:P20504 Pfam ID:PF00623, PF05000, PF04998, PF04997, PF04983

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 133 kDa polypeptide
Gene (Uniprot):OPG151
Chain IDs:I (auth: B)
Chain Length:1164
Number of Molecules:1
Biological Source:Orthopoxvirus vaccinia

UniProt ID:P68694 Pfam ID:PF04565, PF04560, PF12415, PF04567, PF00562

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 35 kDa subunit
Gene (Uniprot):OPG156
Chain IDs:A (auth: C)
Chain Length:305
Number of Molecules:1
Biological Source:Orthopoxvirus vaccinia

UniProt ID:P21087 Pfam ID:PF03396

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 22 kDa subunit
Gene (Uniprot):OPG103
Chain IDs:B (auth: E)
Chain Length:185
Number of Molecules:1
Biological Source:Orthopoxvirus vaccinia

UniProt ID:P68608 Pfam ID:PF05273

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 19 kDa subunit
Gene (Uniprot):OPG131
Chain IDs:J (auth: F)
Chain Length:164
Number of Molecules:1
Biological Source:Orthopoxvirus vaccinia

UniProt ID:Q76ZQ8 Pfam ID:PF05320

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 18 kDa subunit
Gene (Uniprot):OPG119
Chain IDs:C (auth: G)
Chain Length:161
Number of Molecules:1
Biological Source:Orthopoxvirus vaccinia

UniProt ID:P21034 Pfam ID:PF03293

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RNA polymerase-associated transcription-specificity factor RAP94
Gene (Uniprot):OPG109
Chain IDs:K (auth: I)
Chain Length:795
Number of Molecules:1
Biological Source:Orthopoxvirus vaccinia

UniProt ID:P68439 Pfam ID:PF03294

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 7 kDa subunit
Gene (Uniprot):OPG090
Chain IDs:D (auth: J)
Chain Length:63
Number of Molecules:1
Biological Source:Orthopoxvirus vaccinia

UniProt ID:P68315 Pfam ID:PF05864

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Core protein OPG073
Gene (Uniprot):OPG073
Chain IDs:E (auth: Q), F (auth: R)
Chain Length:129
Number of Molecules:2
Biological Source:Orthopoxvirus vaccinia

UniProt ID:P68449 Pfam ID:PF06138

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 30 kDa polypeptide
Gene (Uniprot):OPG066
Chain IDs:L (auth: S)
Chain Length:259
Number of Molecules:1
Biological Source:Orthopoxvirus vaccinia

UniProt ID:P21082 Pfam ID:PF12410, PF01096

Polymer Type:polyribonucleotide
Molecule:URQ-UUG1-1 tRNA (72-MER)
Chain IDs:G (auth: U)
Chain Length:72
Number of Molecules:1
Biological Source:Vaccinia virus

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Nucleoside triphosphatase I
Gene (Uniprot):OPG123
Chain IDs:M (auth: Y)
Chain Length:631
Number of Molecules:1
Biological Source:Orthopoxvirus vaccinia

UniProt ID:P20637 Pfam ID:PF00176, PF00271, PF08469

Modified Residue