9FOZ image
Deposition Date 2024-06-12
Release Date 2025-04-02
Last Version Date 2025-10-22
Entry Detail
PDB ID:
9FOZ
Keywords:
Title:
Cocrystal structure of IDO with a bound inhibitor
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.69 Å
R-Value Free:
0.23
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Indoleamine 2,3-dioxygenase 1
Gene (Uniprot):IDO1
Chain IDs:A, B
Chain Length:418
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Cellular Potency Optimization of Novel Heme-Binding Imidazo[5,1- b ]thiazoles, Imidazo[1,5- a ]pyridines and Pyrazines as Potent IDO1 Inhibitors Devoid of Cytochrome P450 Inhibition.
J.Med.Chem. 68 20130 20153 (2025)
PMID: 41002114 DOI: 10.1021/acs.jmedchem.5c01067

Abstact

Indoleamine 2,3-dioxygenase 1 (IDO1) and tryptophan 2,3-dioxygenase 2 (TDO2) are key enzymes in the kynurenine pathway of the catabolism of the essential amino acid tryptophan. Both enzymes actively contribute to the immunosuppressive microenvironment in many types of cancer. Selective or dual inhibition of these enzymes could, therefore, be beneficial in combination with other immunotherapies such as immune-checkpoint therapy. In a fragment-based approach, we optimized fragment 3 into a series of potent imidazo[5,1-b]thiazole, imidazo[1,5-a]pyridine and pyrazine IDO1 inhibitors. The introduction of the triazole side chain resulted in a reduced enzyme-to-cell potency shift for IDO1 inhibition, albeit at the expense of TDO2 potency, and allowed the discovery of potent and cellular active IDO1 inhibitors. Moreover, despite the propensity of the imidazole motif to inhibit cytochrome P450 enzymes (CYP), we were able to discover potent IDO1 inhibitors devoid of CYP inhibition. Imidazo[1,5-a]pyrazine (R)-100 has an overall suitable profile, which warrants further investigation.

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