9FOW image
Deposition Date 2024-06-12
Release Date 2024-10-16
Last Version Date 2024-12-11
Entry Detail
PDB ID:
9FOW
Title:
GPR180 N-terminal domain
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.88 Å
R-Value Free:
0.23
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 64
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Integral membrane protein GPR180
Gene (Uniprot):Gpr180
Chain IDs:A, B, C
Chain Length:146
Number of Molecules:3
Biological Source:Mus musculus
Primary Citation
GPR180 is a new member of the Golgi-dynamics domain seven-transmembrane helix protein family.
Commun Biol 7 1588 1588 (2024)
PMID: 39609618 DOI: 10.1038/s42003-024-07260-9

Abstact

GOLD domain seven-transmembrane helix (GOST) proteins form a new protein family involved in trafficking of membrane-associated cargo. They share a characteristic extracellular/luminal Golgi-dynamics (GOLD) domain, possibly responsible for ligand recognition. Based on structural homology, GPR180 is a new member of this protein family, but little is known about the cellular role of GPR180. Here we show the X-ray structure of the N-terminal domain of GPR180 (1.9 Å) and can confirm the homology to GOLD domains. Using cellular imaging we show the localization of GPR180 in intracellular vesicular structures implying its exposure to acidic pH environments. With Hydrogen/Deuterium Exchange-Mass Spectrometry (HDX-MS) we identify pH-dependent conformational changes, which can be mapped to a putative ligand binding site in the transmembrane region. The results reveal GPR180's role in intracellular vesicles and offer insights into the pH-dependent function of this conserved GOST protein.

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