ISDA: 9FOC

Deposition Date 2024-06-11

Release Date 2025-09-03

Last Version Date 2025-10-01

Entry Detail

PDB ID:

9FOC

Keywords:

TRANSFERASE

Title:

Crystal structure of the PWWP1 domain of NSD2 bound by compound 11.

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.62 Å

R-Value Free:

0.25

R-Value Work:

0.21

R-Value Observed:

0.21

Space Group:

P 21 21 21

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone-lysine N-methyltransferase NSD2
Gene (Uniprot):NSD2
Chain IDs:A, B
Chain Length:176
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:O96028 Pfam ID:PF00855 EC:2.1.1.356

Ligand Molecules

A1IEG

A1IFS

Primary Citation

Structural and Molecular Insight into the PWWP1 Domain of NSD2 from the Discovery of Novel Binders Via DNA-Encoded Library Screening.

Collie, G.W, Ackroyd, B, Corbishley, C, O'Donovan, D.H, Edwards, A, Gohlke, A, Guo, X, Howells, B, Li, Y, Madin, A, Milbradt, A.G, Rivers, E.L, Talapatra, S.K, Underwood, E, Webb, A.Show

Acs Med.Chem.Lett. 16 1703 1708 (2025)

PMID: 40959233 DOI: 10.1021/acsmedchemlett.5c00396

Abstact

NSD2 is a key epigenetic regulator and has received considerable attention as a drug target due to its well-documented role in tumorigenesis. We report here a DNA-encoded library screen targeting the PWWP1 domain of NSD2 from which we discovered novel, potent, and selective binders. Furthermore, these compounds were used to develop a novel crystal system, increasing our understanding of the folding of this domain. Together, these results provide a solid molecular and structural basis for the further study of the PWWP1 domain of NSD2 as a cancer drug target.

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Primary Citation of related structures

Abstact

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