9FNA image
Deposition Date 2024-06-09
Release Date 2025-03-19
Last Version Date 2025-03-19
Entry Detail
PDB ID:
9FNA
Title:
CryoEM structure of Encapsulin::tdNfsB with an open pore state
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.22 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:29 kDa antigen Cfp29
Chain IDs:A, B (auth: AA), C (auth: AB), D (auth: B), E (auth: BA), F (auth: BB), G (auth: C), H (auth: CA), I (auth: CB), J (auth: D), K (auth: DA), L (auth: DB), M (auth: E), N (auth: EA), O (auth: EB), P (auth: F), Q (auth: FA), R (auth: FB), S (auth: G), T (auth: GA), U (auth: GB), V (auth: H), W (auth: HA), X (auth: HB), Y (auth: I), Z (auth: IA), AA (auth: IB), BA (auth: J), CA (auth: JA), DA (auth: K), EA (auth: KA), FA (auth: L), GA (auth: LA), HA (auth: M), IA (auth: MA), JA (auth: N), KA (auth: NA), LA (auth: O), MA (auth: OA), NA (auth: P), OA (auth: PA), PA (auth: Q), QA, RA (auth: R), SA (auth: RA), TA (auth: S), UA (auth: SA), VA (auth: T), WA (auth: TA), XA (auth: UA), YA (auth: V), ZA (auth: VA), AB (auth: W), BB (auth: WA), CB (auth: X), DB (auth: XA), EB (auth: Y), FB (auth: YA), GB (auth: Z), HB (auth: ZA)
Chain Length:275
Number of Molecules:60
Biological Source:Mycolicibacterium smegmatis
Primary Citation
A nanoengineered tandem nitroreductase: designing a robust prodrug-activating nanoreactor.
Rsc Chem Biol 6 21 35 (2024)
PMID: 39508026 DOI: 10.1039/d4cb00127c

Abstact

Nitroreductases are important enzymes for a variety of applications, including cancer therapy and bioremediation. They often require encapsulation to improve stability and activity. We focus on genetically encoded encapsulation of nitroreductases within protein capsids, like encapsulins. Our study showcases the encapsulation of nitroreductase NfsB as functional dimers within encapsulins, which enhances protein activity and stability in diverse conditions. Mutations within the pore region are beneficial for activity of the encapsulated enzyme, potentially by increasing diffusion rates. Cryogenic electron microscopy reveals the overall architecture of the encapsulated dimeric NfsB within the nanoreactor environment and identifies multiple pore states in the shell. These findings highlight the potential of encapsulins as versatile tools for enhancing enzyme performance across various fields.

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