9FMU image
Entry Detail
PDB ID:
9FMU
EMDB ID:
Keywords:
Title:
Cryo-EM structure of human CD163 SRCR1-9 in complex with haptoglobin-hemoglobin
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-06-07
Release Date:
2024-12-18
Method Details:
Experimental Method:
Resolution:
4.46 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Hemopressin
Chain IDs:A
Chain Length:142
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Spinorphin
Chain IDs:B
Chain Length:147
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Isoform 2 of Haptoglobin
Chain IDs:C
Chain Length:347
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Scavenger receptor cysteine-rich type 1 protein M130
Chain IDs:D, E
Chain Length:1036
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
The Cryo-EM structure of human CD163 bound to haptoglobin-hemoglobin reveals molecular mechanisms of hemoglobin scavenging.
Nat Commun 15 10871 10871 (2024)
PMID: 39738064 DOI: 10.1038/s41467-024-55171-4

Abstact

CD163, a macrophage-specific receptor, plays a critical role in scavenging hemoglobin released during hemolysis, protecting against oxidative effects of heme iron. In the bloodstream, hemoglobin is bound by haptoglobin, leading to its immediate endocytosis by CD163. While haptoglobin's structure and function are well understood, CD163's structure and its interaction with the haptoglobin-hemoglobin complex have remained elusive. Here, we present the cryo-electron microscopy structure of the entire extracellular domain of human CD163 in complex with haptoglobin-hemoglobin. The structure reveals that CD163 assembles into trimers (and to some extent dimers), binding haptoglobin-hemoglobin in their center. Key acidic residues in CD163 interact with lysine residues from both haptoglobin and hemoglobin. Calcium-binding sites located near the haptoglobin-hemoglobin interface in CD163 provide explanation for the calcium dependence of the interaction. Furthermore, we show that the interaction facilitating CD163 oligomerization mimics ligand binding and is also calcium dependent. This structural insight into CD163 advances our understanding of its role in hemoglobin scavenging as well as its broader relevance to structurally related scavenger receptors.

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Primary Citation of related structures