9FKA image
Deposition Date 2024-06-03
Release Date 2025-02-12
Last Version Date 2025-02-12
Entry Detail
PDB ID:
9FKA
Keywords:
Title:
Cryo-EM structure of the reduced cytochrome bd oxidase from M. tuberculosis
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.96 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Probable integral membrane cytochrome D ubiquinol oxidase (Subunit I) CydA (Cytochrome BD-I oxidase subunit I)
Gene (Uniprot):cydA
Chain IDs:A
Chain Length:485
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis H37Rv
Polymer Type:polypeptide(L)
Molecule:Probable integral membrane cytochrome D ubiquinol oxidase (Subunit II) CydB (Cytochrome BD-I oxidase subunit II)
Gene (Uniprot):cydB
Chain IDs:B
Chain Length:346
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis H37Rv
Primary Citation
Menaquinone-specific turnover by Mycobacterium tuberculosis cytochrome bd is redox regulated by the Q-loop disulfide bond.
J.Biol.Chem. 301 108094 108094 (2024)
PMID: 39706268 DOI: 10.1016/j.jbc.2024.108094

Abstact

Cytochrome bd from Mycobacterium tuberculosis (Mtbd) is a menaquinol oxidase that has gained interest as an antibiotic target because of its importance in survival under infectious conditions. Mtbd contains a characteristic disulfide bond that has been hypothesized to allow for Mtbd activity regulation at the enzymatic level, possibly helping M. tuberculosis to rapidly adapt to the hostile environment of the phagosome. Here, the role of the disulfide bond and quinone specificity have been determined by reconstitution of a minimal respiratory chain and the single-particle cryo-EM structure in the disulfide-reduced form. Mtbd was shown to be specific for menaquinone, while regulation by reduction of the Q-loop disulfide bond decreased oxidase activity up to 90%. Structural analysis shows that a salt bridge unique to Mtbd keeps the Q-loop partially structured in its disulfide-reduced form, which could facilitate the rapid activation of Mtbd upon exposure to reactive oxygen species. We signify Mtbd as the first redox sensory terminal oxidase and propose that this helps M. tuberculosis in the defense against reactive oxygen species encountered during infection.

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Primary Citation of related structures