9FJM image
Entry Detail
PDB ID:
9FJM
EMDB ID:
Title:
Cryo-EM structure of the phalloidin-bound pointed end of the actin filament.
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2024-05-31
Release Date:
2024-09-11
Method Details:
Experimental Method:
Resolution:
3.65 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Actin, cytoplasmic 1, N-terminally processed
Chain IDs:A, B, C, D
Chain Length:374
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Phalloidin
Chain IDs:E (auth: H), F (auth: I), G (auth: K), H (auth: J)
Chain Length:7
Number of Molecules:4
Biological Source:Amanita phalloides
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
HIC A HIS modified residue
Peptide-like Molecules
PRD_002366
Primary Citation
Phalloidin and DNase I-bound F-actin pointed end structures reveal principles of filament stabilization and disassembly.
Nat Commun 15 7969 7969 (2024)
PMID: 39261469 DOI: 10.1038/s41467-024-52251-3

Abstact

Actin filament turnover involves subunits binding to and dissociating from the filament ends, with the pointed end being the primary site of filament disassembly. Several molecules modulate filament turnover, but the underlying mechanisms remain incompletely understood. Here, we present three cryo-EM structures of the F-actin pointed end in the presence and absence of phalloidin or DNase I. The two terminal subunits at the undecorated pointed end adopt a twisted conformation. Phalloidin can still bind and bridge these subunits, inducing a conformational shift to a flattened, F-actin-like state. This explains how phalloidin prevents depolymerization at the pointed end. Interestingly, two DNase I molecules simultaneously bind to the phalloidin-stabilized pointed end. In the absence of phalloidin, DNase I binding would disrupt the terminal actin subunit packing, resulting in filament disassembly. Our findings uncover molecular principles of pointed end regulation and provide structural insights into the kinetic asymmetry between the actin filament ends.

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