9FJK image
Deposition Date 2024-05-31
Release Date 2024-08-14
Last Version Date 2025-07-02
Entry Detail
PDB ID:
9FJK
Keywords:
Title:
Omicron BA.1 Spike protein with neutralizing NTD specific mAb K501SP6
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.84 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein,Fibritin
Gene (Uniprot):S, wac
Chain IDs:A, B, C
Chain Length:1277
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2, Enterobacteria phage T4
Polymer Type:polypeptide(L)
Molecule:K501SP6 Fv Heavy Chain
Chain IDs:D (auth: H)
Chain Length:129
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:K501SP6 Fv Light Chain
Chain IDs:E (auth: L)
Chain Length:134
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Broadly potent spike-specific human monoclonal antibodies inhibit SARS-CoV-2 Omicron sub-lineages.
Commun Biol 7 1239 1239 (2024)
PMID: 39354108 DOI: 10.1038/s42003-024-06951-7

Abstact

The continuous emergence of SARS-CoV-2 variants of concern has rendered many therapeutic monoclonal antibodies (mAbs) ineffective. To date, there are no clinically authorized therapeutic antibodies effective against the recently circulating Omicron sub-lineages BA.2.86 and JN.1. Here, we report the isolation of broad and potent neutralizing human mAbs (HuMabs) from a healthcare worker infected with SARS-CoV-2 early in the pandemic. These include a genetically unique HuMab, named K501SP6, which can neutralize different Omicron sub-lineages, including BQ.1, XBB.1, BA.2.86 and JN.1, by targeting a highly conserved epitope on the N terminal domain, as well as an RBD-specific HuMab (K501SP3) with high potency towards earlier circulating variants that was escaped by the more recent Omicron sub-lineages through spike F486 and E484 substitutions. Characterizing SARS-CoV-2 spike-specific HuMabs, including broadly reactive non-RBD-specific HuMabs, can give insight into the immune mechanisms involved in neutralization and immune evasion, which can be a valuable addition to already existing SARS-CoV-2 therapies.

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Primary Citation of related structures