9FHP image
Entry Detail
PDB ID:
9FHP
EMDB ID:
Keywords:
Title:
CryoEM structure of wild-type Turnip Yellows Virus
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-05-28
Release Date:
2024-06-05
Method Details:
Experimental Method:
Resolution:
4.08 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Minor capsid readthrough protein
Chain IDs:A, B, C
Chain Length:202
Number of Molecules:3
Biological Source:Turnip yellows virus
Ligand Molecules
Primary Citation
Structure of the turnip yellows virus particles.
Virology 607 110514 110514 (2025)
PMID: 40179450 DOI: 10.1016/j.virol.2025.110514

Abstact

Turnip yellows virus (TuYV) is a plant virus infecting important crops such as oilseed rape. TuYV is phloem-restricted and transmitted by aphids. The capsid contains two subunit types: the major capsid protein (CP) and a minor component (RTP∗) which arises from the C-terminal cleavage of a readthrough product (RTP). RTP∗ contains the CP sequence fused with a structured domain, denoted NRTD, which is a key determinant of virus transmission. Though both CP and RTP∗ are involved in virus movement and aphid transmission, how RTP∗ is incorporated into the capsid is poorly understood. We present here the structural characterisation, by immunogold labelling and 3D cryo-EM, of the wild-type TuYV and a mutant whose capsid contains the CP only. We show that incorporation of RTP∗ does not impair the capsid structure, and the NRTD does not adopt well-defined positions at the capsid surface. The number of incorporated RTP∗s suggests a random insertion.

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Primary Citation of related structures