9FD2 image
Entry Detail
PDB ID:
9FD2
EMDB ID:
Keywords:
Title:
Structure of Pol II-TC-NER-STK19 complex
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2024-05-16
Release Date:
2024-11-13
Method Details:
Experimental Method:
Resolution:
3.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase subunit
Chain IDs:A
Chain Length:1970
Number of Molecules:1
Biological Source:Sus scrofa domesticus
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase subunit beta
Chain IDs:B
Chain Length:1300
Number of Molecules:1
Biological Source:Sus scrofa domesticus
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit RPB3
Chain IDs:C
Chain Length:152
Number of Molecules:1
Biological Source:Sus scrofa domesticus
Polymer Type:polypeptide(L)
Description:RNA polymerase II subunit D
Chain IDs:D
Chain Length:142
Number of Molecules:1
Biological Source:Sus scrofa domesticus
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit E
Chain IDs:E
Chain Length:210
Number of Molecules:1
Biological Source:Sus scrofa domesticus
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I, II, and III subunit RPABC2
Chain IDs:F
Chain Length:127
Number of Molecules:1
Biological Source:Sus scrofa domesticus
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase subunit
Chain IDs:G
Chain Length:172
Number of Molecules:1
Biological Source:Sus scrofa domesticus
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I, II, and III subunit RPABC3
Chain IDs:H
Chain Length:150
Number of Molecules:1
Biological Source:Sus scrofa domesticus
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit RPB9
Chain IDs:I
Chain Length:125
Number of Molecules:1
Biological Source:Sus scrofa domesticus
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I, II, and III subunit RPABC5
Chain IDs:J
Chain Length:67
Number of Molecules:1
Biological Source:Sus scrofa domesticus
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit RPB11-a
Chain IDs:K
Chain Length:117
Number of Molecules:1
Biological Source:Sus scrofa domesticus
Polymer Type:polypeptide(L)
Description:RNA polymerase II, I and III subunit K
Chain IDs:L
Chain Length:58
Number of Molecules:1
Biological Source:Sus scrofa domesticus
Polymer Type:polyribonucleotide
Description:RNA
Chain IDs:O (auth: M)
Chain Length:25
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Description:Non-template DNA
Chain IDs:N
Chain Length:60
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Description:Template DNA
Chain IDs:P (auth: T)
Chain Length:60
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:DNA excision repair protein ERCC-8
Chain IDs:Q (auth: a)
Chain Length:1970
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:DNA damage-binding protein 1
Chain IDs:R (auth: b)
Chain Length:1300
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:DET1- and DDB1-associated protein 1
Chain IDs:S (auth: c)
Chain Length:152
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:UV-stimulated scaffold protein A
Chain IDs:V (auth: d)
Chain Length:142
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:DNA excision repair protein ERCC-6
Chain IDs:U (auth: e)
Chain Length:210
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Transcription elongation factor 1 homolog
Chain IDs:M (auth: f)
Chain Length:127
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Inactive serine/threonine-protein kinase 19
Chain IDs:T (auth: g)
Chain Length:172
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
STK19 drives transcription-coupled repair by stimulating repair complex stability, RNA Pol II ubiquitylation, and TFIIH recruitment.
Mol.Cell 84 4740 ? (2024)
PMID: 39547223 DOI: 10.1016/j.molcel.2024.10.030

Abstact

Transcription-coupled nucleotide excision repair (TC-NER) efficiently eliminates DNA damage that impedes gene transcription by RNA polymerase II (RNA Pol II). TC-NER is initiated by the recognition of lesion-stalled RNA Pol II by CSB, which recruits the CRL4CSA ubiquitin ligase and UVSSA. RNA Pol II ubiquitylation at RPB1-K1268 by CRL4CSA serves as a critical TC-NER checkpoint, governing RNA Pol II stability and initiating DNA damage excision by TFIIH recruitment. However, the precise regulatory mechanisms of CRL4CSA activity and TFIIH recruitment remain elusive. Here, we reveal human serine/threonine-protein kinase 19 (STK19) as a TC-NER factor, which is essential for correct DNA damage removal and subsequent transcription restart. Cryogenic electron microscopy (cryo-EM) studies demonstrate that STK19 is an integral part of the RNA Pol II-TC-NER complex, bridging CSA, UVSSA, RNA Pol II, and downstream DNA. STK19 stimulates TC-NER complex stability and CRL4CSA activity, resulting in efficient RNA Pol II ubiquitylation and correct UVSSA and TFIIH binding. These findings underscore the crucial role of STK19 as a core TC-NER component.

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