9FCR image
Deposition Date 2024-05-15
Release Date 2024-09-11
Last Version Date 2025-04-16
Entry Detail
PDB ID:
9FCR
Keywords:
Title:
Crystal structure of RBBP9 with spacegroup p212121
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
1.37 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Serine hydrolase RBBP9
Gene (Uniprot):RBBP9
Chain IDs:A, B
Chain Length:186
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
A generic cross-seeding approach to protein crystallization.
J.Appl.Crystallogr. 58 383 391 (2025)
PMID: 40170961 DOI: 10.1107/S1600576725000457

Abstact

Obtaining diffraction-quality crystals is often the rate-limiting step during structure determination of biological macromolecules by X-ray crystallography. To address this problem, we investigated a cross-seeding approach with a mixture integrating a heterogeneous set of protein crystal fragments to be used as generic seeds. The fragments are nanometre-sized templates chosen to promote crystal nucleation of protein samples unrelated to the proteins forming the seeds. An atypical crystal form of the human serine hydrolase retinoblastoma binding protein 9 was obtained by adding the mixture to the protein sample before performing standard crystallization assays. The structure was solved by X-ray crystallography at 1.4 Å resolution. Follow-up experiments showed that crystal fragments of α-amylase were critical components in this particular result. The limitations and future applications of our experimental developments are discussed.

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