9F6Y image
Entry Detail
PDB ID:
9F6Y
EMDB ID:
Keywords:
Title:
CryoEM structure of Human Mediator subunit MED23 complexed with phosphorylated Elk-1 transcription factor
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-05-02
Release Date:
2025-04-30
Method Details:
Experimental Method:
Resolution:
2.98 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Mediator of RNA polymerase II transcription subunit 23
Chain IDs:A
Chain Length:1382
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Green fluorescent protein,ETS domain-containing protein Elk-1
Chain IDs:B
Chain Length:341
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP B SER modified residue
Ligand Molecules
Primary Citation
Structural basis of human Mediator recruitment by the phosphorylated transcription factor Elk-1.
Nat Commun 16 3772 3772 (2025)
PMID: 40263353 DOI: 10.1038/s41467-025-59014-8

Abstact

One function of Mediator complex subunit MED23 is to mediate transcriptional activation by the phosphorylated transcription factor Elk-1, in response to the Ras-MAPK signaling pathway. Using cryogenic electron microscopy, we solve a 3.0 Å structure of human MED23 complexed with the phosphorylated activation domain of Elk-1. Elk-1 binds to MED23 via a hydrophobic sequence PSIHFWSTLSPP containing one phosphorylated residue (S383p), which forms a tight turn around the central Phenylalanine. Binding of Elk-1 induces allosteric changes in MED23 that propagate to the opposite face of the subunit, resulting in the dynamic behavior of a 19-residue segment, which alters the molecular surface of MED23. We design a specific MED23 mutation (G382F) that disrupts Elk--1 binding and consequently impairs Elk-1-dependent serum-induced activation of target genes in the Ras-Raf-MEK-ERK signaling pathway. The structure provides molecular details and insights into a Mediator subunit-transcription factor interface.

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Primary Citation of related structures