9F5X image
Entry Detail
PDB ID:
9F5X
EMDB ID:
Title:
Structure of the Chlamydomonas reinhardtii respiratory supercomplex I1 III2 IV2
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2024-04-30
Release Date:
2025-03-12
Method Details:
Experimental Method:
Resolution:
2.82 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Cytochrome b
Chain IDs:A (auth: 1A), B (auth: 1B)
Chain Length:381
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit Rieske, mitochondrial
Chain IDs:C (auth: 1C), D (auth: 1D)
Chain Length:262
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Cytochrome c1
Chain IDs:E (auth: 1E), F (auth: 1F)
Chain Length:314
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Complex III subunit 9
Chain IDs:G (auth: 1G), H (auth: 1H)
Chain Length:60
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 6
Chain IDs:I (auth: 1I), J (auth: 1J)
Chain Length:69
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Mitochondrial ubiquinol-cytochrome c oxidoreductase subunit 8
Chain IDs:K (auth: 1K), L (auth: 1L)
Chain Length:73
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:MPP-Beta
Chain IDs:M (auth: 1M), N (auth: 1N)
Chain Length:495
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Mitochondrial ubiquinol-cytochrome c oxidoreductase subunit 10
Chain IDs:O (auth: 1O), P (auth: 1P)
Chain Length:59
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Alpha-MPP
Chain IDs:Q (auth: 1Q), S (auth: 1S)
Chain Length:485
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 7
Chain IDs:R (auth: 1R), T (auth: 1T)
Chain Length:123
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Cytochrome c oxidase subunit 1
Chain IDs:U (auth: 2A), GA (auth: 3A)
Chain Length:504
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Cytochrome c oxidase polypeptide II
Chain IDs:V (auth: 2B), HA (auth: 3B)
Chain Length:284
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:cytochrome-c oxidase
Chain IDs:W (auth: 2C), IA (auth: 3C)
Chain Length:153
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Cytochrome c oxidase subunit 3
Chain IDs:X (auth: 2D), JA (auth: 3D)
Chain Length:382
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Cox5b
Chain IDs:Y (auth: 2E), KA (auth: 3E)
Chain Length:175
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Cox5c
Chain IDs:Z (auth: 2F), LA (auth: 3F)
Chain Length:96
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Cox6a
Chain IDs:AA (auth: 2G), MA (auth: 3G)
Chain Length:125
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Cox6b
Chain IDs:BA (auth: 2H), NA (auth: 3H)
Chain Length:148
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Cox7c
Chain IDs:CA (auth: 2I), OA (auth: 3I)
Chain Length:101
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Cytochrome c oxidase subunit
Chain IDs:DA (auth: 2J), PA (auth: 3J)
Chain Length:105
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Cox7a
Chain IDs:EA (auth: 2K), QA (auth: 3K)
Chain Length:58
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:CoxIn
Chain IDs:FA (auth: 2L), RA (auth: 3L)
Chain Length:87
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH:ubiquinone oxidoreductase 24 kD subunit
Chain IDs:SA (auth: A)
Chain Length:129
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
Chain IDs:TA (auth: B)
Chain Length:484
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH:ubiquinone oxidoreductase 78 kDa subunit
Chain IDs:UA (auth: C)
Chain Length:67
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH:ubiquinone oxidoreductase 30kDa subunit domain-containing protein
Chain IDs:VA (auth: D)
Chain Length:86
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH:ubiquinone oxidoreductase 49 kD subunit
Chain IDs:WA (auth: E)
Chain Length:219
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH:ubiquinone oxidoreductase subunit 10
Chain IDs:XA (auth: F)
Chain Length:65
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH:ubiquinone oxidoreductase subunit 8
Chain IDs:YA (auth: G)
Chain Length:231
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:B14.5a
Chain IDs:ZA (auth: H)
Chain Length:118
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Mitochondrial NADH:ubiquinone oxidoreductase 18 kDa subunit
Chain IDs:AB (auth: I)
Chain Length:81
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Acyl carrier protein
Chain IDs:BB (auth: J), JC (auth: r)
Chain Length:128
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH:ubiquinone oxidoreductase B14 subunit
Chain IDs:CB (auth: K)
Chain Length:117
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial
Chain IDs:DB (auth: L)
Chain Length:121
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH:ubiquinone oxidoreductase 13 kD-like subunit
Chain IDs:EB (auth: M)
Chain Length:142
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
Chain IDs:FB (auth: N)
Chain Length:156
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH:ubiquinone oxidoreductase B8 subunit
Chain IDs:GB (auth: O)
Chain Length:155
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Putative NADH:ubiquinone oxidoreductase 39 kDa subunit
Chain IDs:HB (auth: P)
Chain Length:130
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 1
Chain IDs:IB (auth: Q)
Chain Length:197
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 2
Chain IDs:JB (auth: R)
Chain Length:387
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 3
Chain IDs:KB (auth: S)
Chain Length:312
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 4
Chain IDs:LB (auth: T)
Chain Length:443
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase subunit 4L
Chain IDs:MB (auth: U)
Chain Length:227
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 5
Chain IDs:NB (auth: V)
Chain Length:546
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 6
Chain IDs:OB (auth: W)
Chain Length:109
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:ASHI
Chain IDs:PB (auth: X)
Chain Length:157
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:P9
Chain IDs:QB (auth: Y)
Chain Length:64
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:KFYI
Chain IDs:RB (auth: Z)
Chain Length:124
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:AGGG
Chain IDs:SB (auth: a)
Chain Length:129
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:ESSS
Chain IDs:TB (auth: b)
Chain Length:484
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:B9
Chain IDs:UB (auth: c)
Chain Length:67
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Mitochondrial NADH:ubiquinone oxidoreductase 10 kDa subunit
Chain IDs:VB (auth: d)
Chain Length:86
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Mitochondrial NADH:ubiquinone oxidoreductase 23 kDa subunit
Chain IDs:WB (auth: e)
Chain Length:219
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Mitochondrial NADH:ubiquinone oxidoreductase 7.5 kDa subunit
Chain IDs:XB (auth: f)
Chain Length:65
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Mitochondrial putative NADH:ubiquinone oxidoreductase 6.5 kDa subunit
Chain IDs:YB (auth: g)
Chain Length:231
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Mitochondrial NADH:ubiquinone oxidoreductase 13 kDa subunit
Chain IDs:ZB (auth: h)
Chain Length:118
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH:ubiquinone oxidoreductase 15 kDa subunit-like
Chain IDs:AC (auth: i)
Chain Length:81
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
Chain IDs:BC (auth: j)
Chain Length:128
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
Chain IDs:CC (auth: k)
Chain Length:117
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH:ubiquinone oxidoreductase 20,9 kD-like subunit
Chain IDs:DC (auth: l)
Chain Length:121
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
Chain IDs:EC (auth: m)
Chain Length:142
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Putative NADH:ubiquinone oxidoreductase 12.5 kDa subunit
Chain IDs:FC (auth: n)
Chain Length:156
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Putative NADH:ubiquinone oxidoreductase 17.8 kDa subunit
Chain IDs:GC (auth: o)
Chain Length:155
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Mitochondrial NADH:ubiquinone oxidoreductase 16 kDa subunit
Chain IDs:HC (auth: p)
Chain Length:130
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Mitochondrial NADH:ubiquinone oxidoreductase 19 kDa subunit
Chain IDs:IC (auth: q)
Chain Length:197
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Mitochondrial NADH:ubiquinone oxidoreductase 32 kDa subunit
Chain IDs:KC (auth: s)
Chain Length:312
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:CAG2 - CA-like
Chain IDs:LC (auth: t)
Chain Length:443
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:CAG1
Chain IDs:MC (auth: u)
Chain Length:227
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:P10
Chain IDs:NC (auth: v)
Chain Length:546
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:Mitochondrial NADH:ubiquinone oxidoreductase 9 kDa subunit
Chain IDs:OC (auth: w)
Chain Length:109
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NUOP8
Chain IDs:PC (auth: x)
Chain Length:157
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Description:NUOP7
Chain IDs:QC (auth: y)
Chain Length:64
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Primary Citation
In-cell architecture of the mitochondrial respiratory chain.
Science 387 1296 1301 (2025)
PMID: 40112058 DOI: 10.1126/science.ads8738

Abstact

Mitochondria regenerate adenosine triphosphate (ATP) through oxidative phosphorylation. This process is carried out by five membrane-bound complexes collectively known as the respiratory chain, working in concert to transfer electrons and pump protons. The precise organization of these complexes in native cells is debated. We used in situ cryo-electron tomography to visualize the native structures and organization of several major mitochondrial complexes in Chlamydomonas reinhardtii cells. ATP synthases and respiratory complexes segregate into curved and flat crista membrane domains, respectively. Respiratory complexes I, III, and IV assemble into a respirasome supercomplex, from which we determined a native 5-angstrom (Å) resolution structure showing binding of electron carrier cytochrome c. Combined with single-particle cryo-electron microscopy at 2.4-Å resolution, we model how the respiratory complexes organize inside native mitochondria.

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