9F44 image
Deposition Date 2024-04-26
Release Date 2024-08-14
Last Version Date 2024-08-28
Entry Detail
PDB ID:
9F44
Title:
cryo-EM structure of LST2 TOS peptide bound to human mTOR complex 1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.68 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Serine/threonine-protein kinase mTOR
Gene (Uniprot):MTOR
Chain IDs:A, B
Chain Length:2549
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Target of rapamycin complex subunit LST8
Gene (Uniprot):MLST8
Chain IDs:C, D
Chain Length:326
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Regulatory-associated protein of mTOR
Gene (Uniprot):RPTOR
Chain IDs:E, F
Chain Length:1363
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Lateral signaling target protein 2 homolog
Gene (Uniprot):ZFYVE28
Chain IDs:G, H
Chain Length:13
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
mTORC1 phosphorylates and stabilizes LST2 to negatively regulate EGFR.
Proc.Natl.Acad.Sci.USA 121 e2405959121 e2405959121 (2024)
PMID: 39141345 DOI: 10.1073/pnas.2405959121

Abstact

TORC1 (target of rapamycin complex 1) is a highly conserved protein kinase that plays a central role in regulating cell growth. Given the role of mammalian TORC1 (mTORC1) in metabolism and disease, understanding mTORC1 downstream signaling and feedback loops is important. mTORC1 recognizes some of its substrates via a five amino acid binding sequence called the TOR signaling (TOS) motif. mTORC1 binding to a TOS motif facilitates phosphorylation of a distinct, distal site. Here, we show that LST2, also known as ZFYVE28, contains a TOS motif (amino acids 401 to 405) and is directly phosphorylated by mTORC1 at serine 670 (S670). mTORC1-mediated S670 phosphorylation promotes LST2 monoubiquitination on lysine 87 (K87). Monoubiquitinated LST2 is stable and displays a broad reticular distribution. When mTORC1 is inactive, unphosphorylated LST2 is degraded by the proteasome. The absence of LST2 enhances EGFR (epidermal growth factor receptor) signaling. We propose that mTORC1 negatively feeds back on its upstream receptor EGFR via LST2.

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Primary Citation of related structures