9F3V image
Deposition Date 2024-04-26
Release Date 2024-11-06
Last Version Date 2024-11-27
Entry Detail
PDB ID:
9F3V
Keywords:
Title:
RIP2K kinase domain dimer with bound compound 37 (N399), a speific NOD1 pathway inhibitor
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.94 Å
R-Value Free:
0.25
R-Value Work:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Receptor-interacting serine/threonine-protein kinase 2
Gene (Uniprot):RIPK2
Chain IDs:A, B
Chain Length:320
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
4-Anilinoquinazoline Derivatives as the First Potent NOD1-RIPK2 Signaling Pathway Inhibitors at the Nanomolar Range.
J.Med.Chem. 67 19304 19322 (2024)
PMID: 39444201 DOI: 10.1021/acs.jmedchem.4c01713

Abstact

Inflammation is a defense mechanism that restores tissue damage and eliminates pathogens. Among the pattern recognition receptors that recognize danger or pathogenic signals, nucleotide oligomerization domains 1 and 2 (NOD1/2) have been identified to play an important role in innate immunity responses, and inhibition of NOD1 could be interesting to treat severe infections and inflammatory diseases. In this work, we identified the first selective NOD1 versus NOD2 pathway inhibitors at the nanomolar range based on a 4-anilinoquinazoline scaffold. We demonstrated that NOD1 inhibition occurs through the inhibition of receptor interacting protein kinase 2 (RIPK2), which is involved in its downstream signaling pathways. Compound 37 demonstrates no cytotoxicity, a selectivity for RIPK2 over epithelial and vascular endothelial growth factor receptors (EGFR/VEGFR), and a capacity to reduce pro-inflammatory cytokine IL-8 secretion. The structure of the RIPK2-compound 37 complex was resolved by crystallography. The 4-anilinoquinazoline scaffold offers novel perspectives to design NOD1-RIPK2 signaling inhibitors.

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Primary Citation of related structures