9F0S image
Entry Detail
PDB ID:
9F0S
Keywords:
Title:
VIM-2 in complex with GKV63 (5j) - dynamically chiral phosphonic acid-type metallo-beta-lactamase inhibitors
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2024-04-17
Release Date:
2025-04-30
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.18
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Metallo-beta-lactamase type 2
Chain IDs:A, B
Chain Length:254
Number of Molecules:2
Biological Source:Pseudomonas aeruginosa
Primary Citation
Dynamically chiral phosphonic acid-type metallo-beta-lactamase inhibitors.
Commun Chem 8 119 119 (2025)
PMID: 40253435 DOI: 10.1038/s42004-025-01510-5

Abstact

Antibiotic resistance is a growing global health threat that risks the lives of millions. Among the resistance mechanisms, that mediated by metallo-β-lactamases is of particular concern as these bacterial enzymes dismantle most β-lactam antibiotics, which are our widest applied and cheapest to produce antibiotic agents. So far, no clinically applicable metallo-β-lactamase inhibitors are available. Aiming to adapt to structural variations, we introduce the inhibitor concept: dynamically chiral phosphonic acids. We demonstrate that they are straightforward to synthesize, penetrate bacterial membranes, inhibit the metallo-β-lactamase enzymes NDM-1, VIM-2 and GIM-1, and are non-toxic to human cells. Mimicking the transition state of β-lactam hydrolysis, they target the Zn ions of the metallo-β-lactamase active site. As a unique feature, both of their stereoisomers bind metallo-β-lactamases, which provides them unparalleled adaptability to the structural diversity of these enzymes, and may allow them to hamper bacteria's ability for resistance development.

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