9EZJ image
Entry Detail
PDB ID:
9EZJ
Keywords:
Title:
Apo human TDO in complex with a bound inhibitor (Cpd-4)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-04-12
Release Date:
2024-06-05
Method Details:
Experimental Method:
Resolution:
2.61 Å
R-Value Free:
0.33
R-Value Work:
0.29
R-Value Observed:
0.29
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tryptophan 2,3-dioxygenase
Chain IDs:A, B, C, D
Chain Length:403
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Discovery and binding mode of small molecule inhibitors of the apo form of human TDO2.
Sci Rep 14 27937 27937 (2024)
PMID: 39537789 DOI: 10.1038/s41598-024-78981-4

Abstact

Tryptophan-2,3-dioxygenase (TDO2) and indoleamine-2,3-dioxygenase (IDO1) are structurally distinct heme enzymes that catalyze the conversion of L-tryptophan to N-formyl-kynurenine, and play important roles in metabolism, inflammation, and tumor immune surveillance. The enzymes can adopt an inactive, heme-free (apo) state or an active, heme-containing (holo) state, with the balance between them varying dynamically according to biological conditions. Inhibitors of holo-TDO2 are known but, despite several advantages of the heme-free state as a drug target, no inhibitors of apo-TDO2 have been reported. We describe the discovery of the first apo-TDO2 binding inhibitors, to our knowledge, and their inhibition of cellular TDO2 activity at low nanomolar concentrations. The crystal structure of a potent, small molecule inhibitor bound to apo-TDO2 reveals its detailed binding interactions within the large, hydrophobic heme binding pocket of the active site.

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