9EY1 image
Entry Detail
PDB ID:
9EY1
EMDB ID:
Title:
Human mitochondrial RNase Z with tRNA-His precursor
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-04-09
Release Date:
2024-11-13
Method Details:
Experimental Method:
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:3-hydroxyacyl-CoA dehydrogenase type-2
Chain IDs:B (auth: A), C (auth: B), D (auth: C), E (auth: D)
Chain Length:261
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Zinc phosphodiesterase ELAC protein 2
Chain IDs:A (auth: E)
Chain Length:797
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:tRNA methyltransferase 10 homolog C
Chain IDs:G (auth: F)
Chain Length:356
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Description:tRNA-His-tRNA-Ser
Chain IDs:F (auth: T)
Chain Length:127
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
1MA F A modified residue
Primary Citation
Structural basis of 3'-tRNA maturation by the human mitochondrial RNase Z complex.
Embo J. 43 6573 6590 (2024)
PMID: 39516281 DOI: 10.1038/s44318-024-00297-w

Abstact

Maturation of human mitochondrial tRNA is essential for cellular energy production, yet the underlying mechanisms remain only partially understood. Here, we present several cryo-EM structures of the mitochondrial RNase Z complex (ELAC2/SDR5C1/TRMT10C) bound to different maturation states of mitochondrial tRNAHis, showing the molecular basis for tRNA-substrate selection and catalysis. Our structural insights provide a molecular rationale for the 5'-to-3' tRNA processing order in mitochondria, the 3'-CCA antideterminant effect, and the basis for sequence-independent recognition of mitochondrial tRNA substrates. Furthermore, our study links mutations in ELAC2 to clinically relevant mitochondrial diseases, offering a deeper understanding of the molecular defects contributing to these conditions.

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Primary Citation of related structures