9EX5 image
Entry Detail
PDB ID:
9EX5
Keywords:
Title:
Crystal structure of Yeast Clathrin Heavy Chain N-terminal domain bound to Epsin-5 peptide (LIDL)
Biological Source:
PDB Version:
Deposition Date:
2024-04-05
Release Date:
2024-11-13
Method Details:
Experimental Method:
Resolution:
2.01 Å
R-Value Free:
0.21
R-Value Work:
0.18
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Clathrin heavy chain
Chain IDs:A, B, C
Chain Length:373
Number of Molecules:3
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Description:Epsin-5
Chain IDs:D, E, F, G, H, I, J, K (auth: L), L (auth: M)
Chain Length:9
Number of Molecules:9
Biological Source:Saccharomyces cerevisiae
Primary Citation
Subtleties in Clathrin heavy chain binding boxes provide selectivity among adaptor proteins of budding yeast.
Nat Commun 15 9655 9655 (2024)
PMID: 39511183 DOI: 10.1038/s41467-024-54037-z

Abstact

Clathrin forms a triskelion, or three-legged, network that regulates cellular processes by facilitating cargo internalization and trafficking in eukaryotes. Its N-terminal domain is crucial for interacting with adaptor proteins, which link clathrin to the membrane and engage with specific cargo. The N-terminal domain contains up to four adaptor-binding sites, though their role in preferential occupancy by adaptor proteins remains unclear. In this study, we examine the binding hierarchy of adaptors for clathrin, using integrative biophysical and structural approaches, along with in vivo functional experiments. We find that yeast epsin Ent5 has the highest affinity for clathrin, highlighting its key role in cellular trafficking. Epsins Ent1 and Ent2, crucial for endocytosis but thought to have redundant functions, show distinct binding patterns. Ent1 exhibits stronger interactions with clathrin than Ent2, suggesting a functional divergence toward actin binding. These results offer molecular insights into adaptor protein selectivity, suggesting they competitively bind clathrin while also targeting three different clathrin sites.

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