9EVC image
Deposition Date 2024-03-28
Release Date 2025-02-05
Last Version Date 2025-07-02
Entry Detail
PDB ID:
9EVC
Title:
CryoEM structure of LMCA1 in E1-Ca state
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.73 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Calcium-transporting ATPase lmo0841
Gene (Uniprot):lmo0841
Chain IDs:A
Chain Length:880
Number of Molecules:1
Biological Source:Listeria monocytogenes
Ligand Molecules
Primary Citation
Dephosphorylation and ion binding in prokaryotic calcium transport.
Sci Adv 10 eadp2916 eadp2916 (2024)
PMID: 39908574 DOI: 10.1126/sciadv.adp2916

Abstact

Calcium (Ca2+) signaling is fundamental to cellular processes in both eukaryotic and prokaryotic organisms. While the mechanisms underlying eukaryotic Ca2+ transport are well documented, an understanding of prokaryotic transport remains nascent. LMCA1, a Ca2+ adenosine triphosphatase (ATPase) from Listeria monocytogenes, has emerged as a prototype for elucidating structure and dynamics in prokaryotic Ca2+ transport. Here, we used a multidisciplinary approach integrating kinetics, structure, and dynamics to unravel the intricacies of LMCA1 function. A cryo-electron microscopy (cryo-EM) structure of a Ca2+-bound E1 state showed ion coordination by Asp720, Asn716, and Glu292. Time-resolved x-ray solution scattering experiments identified phosphorylation as the rate-determining step. A cryo-EM E2P state structure exhibited remarkable similarities to a SERCA1a E2-P* state, which highlights the essential role of the unique P-A domain interface in enhancing dephosphorylation rates and reconciles earlier proposed mechanisms. Our study underscores the distinctiveness between eukaryotic and prokaryotic Ca2+ ATPase transport systems and positions LMCA1 as a promising drug target for developing antimicrobial strategies.

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