9ETZ image
Entry Detail
PDB ID:
9ETZ
EMDB ID:
Title:
III2IV respiratory supercomplex from Saccharomyces cerevisiae
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2024-03-27
Release Date:
2024-10-02
Method Details:
Experimental Method:
Resolution:
2.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 1, mitochondrial
Chain IDs:A, K (auth: L)
Chain Length:431
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 2, mitochondrial
Chain IDs:B, L (auth: M)
Chain Length:352
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytochrome b
Chain IDs:C, M (auth: N)
Chain Length:269
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytochrome c1, heme protein, mitochondrial
Chain IDs:D, N (auth: O)
Chain Length:247
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit Rieske, mitochondrial
Chain IDs:E, O (auth: P)
Chain Length:133
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 6, mitochondrial
Chain IDs:F, P (auth: Q)
Chain Length:102
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 7, mitochondrial
Chain IDs:G, Q (auth: R)
Chain Length:126
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 8, mitochondrial
Chain IDs:H, R (auth: S)
Chain Length:51
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 9, mitochondrial
Chain IDs:I, S (auth: T)
Chain Length:55
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 10, mitochondrial
Chain IDs:J, T (auth: U)
Chain Length:75
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytochrome c oxidase subunit 1
Chain IDs:U (auth: a)
Chain Length:431
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytochrome c oxidase subunit 2
Chain IDs:V (auth: b)
Chain Length:352
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytochrome c oxidase subunit 3
Chain IDs:W (auth: c)
Chain Length:269
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytochrome c oxidase subunit 4, mitochondrial
Chain IDs:X (auth: d)
Chain Length:247
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytochrome c oxidase subunit 5A, mitochondrial
Chain IDs:FA (auth: e)
Chain Length:133
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytochrome c oxidase subunit 6, mitochondrial
Chain IDs:Y (auth: f)
Chain Length:102
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytochrome c oxidase subunit 7, mitochondrial
Chain IDs:Z (auth: g)
Chain Length:126
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytochrome c oxidase subunit 8, mitochondrial
Chain IDs:AA (auth: h)
Chain Length:51
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytochrome c oxidase subunit 9, mitochondrial
Chain IDs:BA (auth: i)
Chain Length:55
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytochrome c oxidase subunit 12, mitochondrial
Chain IDs:CA (auth: j)
Chain Length:75
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytochrome c oxidase subunit 13, mitochondrial
Chain IDs:DA (auth: k)
Chain Length:113
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytochrome c oxidase subunit 26, mitochondrial
Chain IDs:EA (auth: l)
Chain Length:431
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Primary Citation
Electron transfer in the respiratory chain at low salinity.
Nat Commun 15 8241 8241 (2024)
PMID: 39300056 DOI: 10.1038/s41467-024-52475-3

Abstact

Recent studies have established that cellular electrostatic interactions are more influential than assumed previously. Here, we use cryo-EM and perform steady-state kinetic studies to investigate electrostatic interactions between cytochrome (cyt.) c and the complex (C) III2-IV supercomplex from Saccharomyces cerevisiae at low salinity. The kinetic studies show a sharp transition with a Hill coefficient ≥2, which together with the cryo-EM data at 2.4 Å resolution indicate multiple cyt. c molecules bound along the supercomplex surface. Negatively charged loops of CIII2 subunits Qcr6 and Qcr9 become structured to interact with cyt. c. In addition, the higher resolution allows us to identify water molecules in proton pathways of CIV and, to the best of our knowledge, previously unresolved cardiolipin molecules. In conclusion, the lowered electrostatic screening renders engagement of multiple cyt. c molecules that are directed by electrostatically structured CIII2 loops to conduct electron transfer between CIII2 and CIV.

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