ISDA

Deposition Date 2024-03-18

Release Date 2025-06-18

Last Version Date 2025-06-18

Entry Detail

PDB ID:

9EPC

Keywords:

TRANSCRIPTION

Title:

Cryo-EM structure of the Plastid-encoded RNA polymerase from Sinapis alba

Biological Source:

Source Organism:

Sinapis alba (Taxon ID: 3728)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.00 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit alpha
Gene (Uniprot):rpoA
Chain IDs:A, B
Chain Length:327
Number of Molecules:2
Biological Source:Sinapis alba

UniProt ID:A0A6C0M610 Pfam ID:PF01193, PF01000, PF03118

Polymer Type:polypeptide(L)
Molecule:RpoB, subunit beta
Chain IDs:C
Chain Length:1072
Number of Molecules:1
Biological Source:Sinapis alba

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit beta'
Gene (Uniprot):rpoC1
Chain IDs:D
Chain Length:680
Number of Molecules:1
Biological Source:Sinapis alba

UniProt ID:A0A6C0M5W0 Pfam ID:PF04997, PF00623

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit beta''
Gene (Uniprot):rpoC2
Chain IDs:E
Chain Length:1373
Number of Molecules:1
Biological Source:Sinapis alba

UniProt ID:A0A6C0M829 Pfam ID:PF05000, PF04998

Polymer Type:polypeptide(L)
Molecule:PAP1, pTAC3
Chain IDs:F
Chain Length:911
Number of Molecules:1
Biological Source:Sinapis alba

Polymer Type:polypeptide(L)
Molecule:PAP2, pTAC2
Chain IDs:G
Chain Length:1174
Number of Molecules:1
Biological Source:Sinapis alba

Polymer Type:polypeptide(L)
Molecule:PAP3, pTAC10
Chain IDs:H
Chain Length:675
Number of Molecules:1
Biological Source:Sinapis alba

Polymer Type:polypeptide(L)
Molecule:PAP4, FSD3
Chain IDs:I
Chain Length:264
Number of Molecules:1
Biological Source:Sinapis alba

Polymer Type:polypeptide(L)
Molecule:PAP5, pTAC12, HEMERA
Chain IDs:J
Chain Length:529
Number of Molecules:1
Biological Source:Sinapis alba

Polymer Type:polypeptide(L)
Molecule:PAP6, FLN1
Chain IDs:K
Chain Length:460
Number of Molecules:1
Biological Source:Sinapis alba

Polymer Type:polypeptide(L)
Molecule:PAP7, pTAC14
Chain IDs:L
Chain Length:483
Number of Molecules:1
Biological Source:Sinapis alba

Polymer Type:polypeptide(L)
Molecule:PAP8, pTAC6
Chain IDs:M
Chain Length:334
Number of Molecules:1
Biological Source:Sinapis alba

Polymer Type:polypeptide(L)
Molecule:PAP9, FSD2
Chain IDs:N
Chain Length:297
Number of Molecules:1
Biological Source:Sinapis alba

Polymer Type:polypeptide(L)
Molecule:PAP10, TRXz
Chain IDs:O, P
Chain Length:185
Number of Molecules:2
Biological Source:Sinapis alba

Polymer Type:polypeptide(L)
Molecule:PAP11, MurE-like
Chain IDs:Q
Chain Length:768
Number of Molecules:1
Biological Source:Sinapis alba

Polymer Type:polypeptide(L)
Molecule:PAP12, pTAC7
Chain IDs:R
Chain Length:162
Number of Molecules:1
Biological Source:Sinapis alba

Polymer Type:polypeptide(L)
Molecule:FLN2
Chain IDs:S
Chain Length:611
Number of Molecules:1
Biological Source:Sinapis alba

Polymer Type:polypeptide(L)
Molecule:pTAC18
Chain IDs:T
Chain Length:140
Number of Molecules:1
Biological Source:Sinapis alba

Polymer Type:polypeptide(L)
Molecule:PRIN2, PLASTID REDOX INSENSITIVE 2
Chain IDs:U
Chain Length:187
Number of Molecules:1
Biological Source:Sinapis alba

Ligand Molecules