9EOJ image
Deposition Date 2024-03-15
Release Date 2024-04-17
Last Version Date 2024-11-13
Entry Detail
PDB ID:
9EOJ
Keywords:
Title:
Vertebrate microtubule-capping gamma-tubulin ring complex
Biological Source:
Source Organism:
Xenopus laevis (Taxon ID: 8355)
Method Details:
Experimental Method:
Resolution:
17.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Mitotic-spindle organizing protein 1
Gene (Uniprot):mzt1
Chain IDs:A (auth: B), B (auth: D)
Chain Length:896
Number of Molecules:2
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Gamma-tubulin complex component 3 homolog
Gene (Uniprot):tubgcp3
Chain IDs:C (auth: Q), N (auth: c), O (auth: d), P (auth: e), Q (auth: f)
Chain Length:906
Number of Molecules:5
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Gamma-tubulin complex component
Gene (Uniprot):tubgcp2.L
Chain IDs:D (auth: R), J (auth: Y), K (auth: Z), L (auth: a), M (auth: b)
Chain Length:896
Number of Molecules:5
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Gamma-tubulin complex component 6
Chain IDs:E (auth: S)
Chain Length:451
Number of Molecules:1
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Tubulin gamma-1 chain
Gene (Uniprot):tubg1
Chain IDs:F (auth: T), R (auth: h), S (auth: i), T (auth: k), U (auth: l), V (auth: m), W (auth: n), X (auth: o), Y (auth: p), Z (auth: q), AA (auth: r), BA (auth: s), CA (auth: t), DA (auth: w)
Chain Length:451
Number of Molecules:14
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Gamma-tubulin complex component
Gene (Uniprot):LOC108708438
Chain IDs:G (auth: U)
Chain Length:1019
Number of Molecules:1
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Gamma-tubulin complex component
Gene (Uniprot):tubgcp4.L
Chain IDs:H (auth: V), I (auth: W)
Chain Length:666
Number of Molecules:2
Biological Source:Xenopus laevis
Ligand Molecules
Primary Citation
gamma-TuRC asymmetry induces local protofilament mismatch at the RanGTP-stimulated microtubule minus end.
Embo J. 43 2062 2085 (2024)
PMID: 38600243 DOI: 10.1038/s44318-024-00087-4

Abstact

The γ-tubulin ring complex (γ-TuRC) is a structural template for de novo microtubule assembly from α/β-tubulin units. The isolated vertebrate γ-TuRC assumes an asymmetric, open structure deviating from microtubule geometry, suggesting that γ-TuRC closure may underlie regulation of microtubule nucleation. Here, we isolate native γ-TuRC-capped microtubules from Xenopus laevis egg extract nucleated through the RanGTP-induced pathway for spindle assembly and determine their cryo-EM structure. Intriguingly, the microtubule minus end-bound γ-TuRC is only partially closed and consequently, the emanating microtubule is locally misaligned with the γ-TuRC and asymmetric. In the partially closed conformation of the γ-TuRC, the actin-containing lumenal bridge is locally destabilised, suggesting lumenal bridge modulation in microtubule nucleation. The microtubule-binding protein CAMSAP2 specifically binds the minus end of γ-TuRC-capped microtubules, indicating that the asymmetric minus end structure may underlie recruitment of microtubule-modulating factors for γ-TuRC release. Collectively, we reveal a surprisingly asymmetric microtubule minus end protofilament organisation diverging from the regular microtubule structure, with direct implications for the kinetics and regulation of nucleation and subsequent modulation of microtubules during spindle assembly.

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Primary Citation of related structures