9ENR image
Deposition Date 2024-03-13
Release Date 2025-03-26
Last Version Date 2025-07-16
Entry Detail
PDB ID:
9ENR
Title:
Vitellogenin from the honey bee hemolymph
Biological Source:
Source Organism:
Apis cerana (Taxon ID: 7461)
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Vitellogenin
Gene (Uniprot):Vg
Chain IDs:A
Chain Length:1770
Number of Molecules:1
Biological Source:Apis cerana
Ligand Molecules
Primary Citation
Cryo-EM structure of native honey bee vitellogenin.
Nat Commun 16 5736 5736 (2025)
PMID: 40593495 DOI: 10.1038/s41467-025-58575-y

Abstact

Vitellogenin (Vg) is the main yolk precursor lipoprotein in almost all egg-laying animals. In addition, along its evolutionary history, Vg has developed a range of new functions in different taxa. In the honey bee, Vg has functions related to immunity, antioxidant protection, social behavior and longevity. However, the molecular mechanisms underlying Vg functionalities are still poorly understood. Here, we report the cryo-EM structure of full-length honey bee Vg, one-step purified directly from hemolymph. The structure provides structural insights into the overall domain architecture, including the lipid binding cavity and the previously uncharacterized von Willebrand factor type D domain. A domain of unknown function has been identified as a C-terminal cystine knot domain based on structural homology. Information about post-translational modifications, cleavage products, metal and lipid binding allow an improved understanding of the mechanisms underlying the range of Vg functionalities. The findings have numerous implications for the structure-function relationship of vitellogenins of other species as well as members of the same protein superfamily, which share the same structural elements.

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Primary Citation of related structures