9ENA image
Deposition Date 2024-03-12
Release Date 2025-06-04
Last Version Date 2025-06-04
Entry Detail
PDB ID:
9ENA
Keywords:
Title:
Lysosomal glucocerebrosidase in complex with a stabilizing nanobody
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Lama glama (Taxon ID: 9844)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
I 4 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glucosylceramidase
Gene (Uniprot):GBA1
Mutagens:R495H
Chain IDs:A
Chain Length:497
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Chains: B
Chain IDs:B
Chain Length:142
Number of Molecules:1
Biological Source:Lama glama
Primary Citation
Developing nanobodies as allosteric molecular chaperones of glucocerebrosidase function.
Nat Commun 16 4890 4890 (2025)
PMID: 40425544 DOI: 10.1038/s41467-025-60134-4

Abstact

The enzyme glucocerebrosidase (GCase) catalyses the hydrolysis of glucosylceramide to glucose and ceramide within lysosomes. Homozygous or compound heterozygous mutations in the GCase-encoding GBA1 gene cause the lysosomal storage disorder Gaucher disease, while heterozygous and homozygous mutations are the most frequent genetic risk factor for Parkinson's disease. These mutations commonly affect GCase stability, trafficking or activity. Here, we report the development and characterization of nanobodies (Nbs) targeting and acting as molecular chaperones for GCase. We identify several Nb families that bind with nanomolar affinity to GCase. Based on biochemical characterization, we group the Nbs in two classes: Nbs that improve the activity of the enzyme and Nbs that increase GCase stability in vitro. A selection of the most promising Nbs is shown to improve GCase function in cell models and positively impact the activity of the N370S mutant GCase. These results lay the foundation for the development of new therapeutic routes.

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Primary Citation of related structures
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